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Assign categories to nodes and edges #165

Merged
merged 13 commits into from
Dec 3, 2024
Merged

Assign categories to nodes and edges #165

merged 13 commits into from
Dec 3, 2024

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caufieldjh
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@caufieldjh caufieldjh linked an issue Dec 2, 2024 that may be closed by this pull request
Do Biolink category assignment to nodes here (rather than in PHENIO) #157
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@caufieldjh
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Node category counts now:

$ cut -f2 data/transformed/phenio/phenio_node_sources_nodes.tsv | sort | uniq -c | sort
      1 category
     38 biolink:LifeStage
    242 biolink:Gene
    320 biolink:MolecularEntity
   1101 biolink:Protein
   1775 biolink:Cell
   1854 biolink:OrganismTaxon
   4498 biolink:CellularComponent
   5616 biolink:ChemicalEntity
  12576 biolink:MolecularActivity
  16471 biolink:NamedThing
  27870 biolink:Disease
  30655 biolink:BiologicalProcess
  62542 biolink:AnatomicalEntity
 124131 biolink:PhenotypicFeature

@caufieldjh caufieldjh marked this pull request as ready for review December 3, 2024 18:55
@caufieldjh caufieldjh merged commit 4da3755 into master Dec 3, 2024
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@caufieldjh caufieldjh deleted the 157-do-biolink-category-assignment-to-nodes-here-rather-than-in-phenio branch December 3, 2024 18:56
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Do Biolink category assignment to nodes here (rather than in PHENIO)
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@caufieldjh