cell output filenames made consistent...

KrasnitzLab · May 28, 2020 · f861dda · f861dda
1 parent f2ae971
commit f861dda
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/sgains/pipelines/varbin_10x_pipeline.py b/sgains/pipelines/varbin_10x_pipeline.py
@@ -276,7 +276,8 @@ def process_cell_reads(self, cell_id):
             return
 
         df = self.varbin_cell_reads(reads_df)
-        outfile = self.config.varbin_filename(f"C{cell_id:0>5}")
+        cell_name = self._cell_name(cell_id)
+        outfile = self.config.varbin_filename(cell_name)
         df.to_csv(outfile, sep='\t', index=False)
 
         cell_dirname = self._cell_reads_dirname(cell_id)