Python wrapper for Dyngen single-cell simulation #8
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Dyngen is a multi-modal simulation engine for studying dynamic cellular processes at single-cell resolution. The backbone of a dyngen model is what determines the overall dynamic process that a cell will undergo during a simulation. It consists of a set of gene modules, which regulate each other in such a way that expression of certain genes change over time in a specific manner.
dyngen_utils.py consists of three functions to install dyngen, get a list of backbones, and generate simulated datasets.
dyngen_simulation_example.ipynb is a minimal usage example.