Contribs rename (#993)

Moving files to new location
And update code systems and language translations

interface/code_systems/dataloads_ajax.php

@@ -59,8 +59,7 @@
 <script type="text/javascript" src="../../library/js/jquery-ui-1.8.21.custom.min.js"></script>
 <script>
 
-// placemaker for when support DSMIV
-// var db_list = [ "DSMIV", "ICD10", "RXNORM", "SNOMED"];
+
 var db_list = [ "ICD10", "RXNORM", "SNOMED"];
 var accOpts = {
     header: "h3", 
@@ -102,23 +101,23 @@ function() {
             );
             $("#" + $(ui.newContent).attr('id') + "_unsupportedmsg").hover(
                 function() {
-                $(this).append('<div class="tooltip"><p><?php echo xla("LibreEHR does not recognize the incoming file in the contrib directory. This is most likely because you need to configure the release in the supported_external_dataloads table in the MySQL database."); ?></p></div>');
+                $(this).append('<div class="tooltip"><p><?php echo xla("LibreEHR does not recognize the incoming file in the modules/medical_code_sets directory. This is most likely because you need to configure the release in the supported_external_dataloads table in the MySQL database."); ?></p></div>');
                 },
                 function() {
                 $("div.tooltip").remove();
                 }
             );
             $("#" + $(ui.newContent).attr('id') + "_dirmsg").hover(
                 function() {
-                $(this).append('<div class="tooltip"><p><?php echo xla("Please create the following directory before proceeding"); ?>' + ': contrib/' + $(ui.newContent).attr('id').toLowerCase() + '</p></div>');
+                $(this).append('<div class="tooltip"><p><?php echo xla("Please create the following directory before proceeding"); ?>' + ': modules/medical_code_sets/' + $(ui.newContent).attr('id').toLowerCase() + '</p></div>');
                 },
                 function() {
                 $("div.tooltip").remove();
                 }
             );
             $("#" + $(ui.newContent).attr('id') + "_msg").hover(
                 function() {
-                $(this).append('<div class="tooltip"><p><?php echo xla("Please place your install files in following directory"); ?>' + ': contrib/' + $(ui.newContent).attr('id').toLowerCase() + '</p></div>');
+                $(this).append('<div class="tooltip"><p><?php echo xla("Please place your install files in following directory"); ?>' + ': modules/medical_code_sets/' + $(ui.newContent).attr('id').toLowerCase() + '</p></div>');
                 },
                 function() {
                 $("div.tooltip").remove();

interface/code_systems/icd10_howto.php

@@ -34,7 +34,7 @@
 <?php echo xlt("Steps to install the ICD 10 database"); ?>:
 <ol>
 <li><?php echo xlt("The raw data feed release can be obtained from"); ?> <b><a href="https://www.cms.gov/Medicare/Coding/ICD10"><?php echo xlt("this location"); ?></a></b>
-<li><?php echo xlt("Place the downloaded ICD 10 database zip files into the following directory"); ?>: contrib/icd10
+<li><?php echo xlt("Place the downloaded ICD 10 database zip files into the following directory"); ?>: modules/medical_code_sets/icd10
 </li>
 <li><?php echo xlt("Return to this page and you will be able to complete the ICD10 installation process by clicking on the ICD10 section header"); ?>
 </li>

interface/code_systems/list_staged.php

@@ -57,7 +57,7 @@
 }
 
 $db = isset($_GET['db']) ? $_GET['db'] : '0';
-$mainPATH = $GLOBALS['fileroot']."/contrib/".strtolower($db);
+$mainPATH = $GLOBALS['fileroot']."/modules/medical_code_sets/".strtolower($db);
 $file_checksum = "";
 
 //

interface/code_systems/rxnorm_howto.php

@@ -35,7 +35,7 @@
 <ol>
 <li><?php echo xlt("The first step is to open an account with the Unified Medical Language System web site"); ?> <b><a href="https://utslogin.nlm.nih.gov/cas/login"><?php echo xlt("here"); ?></a></b></li>
 <li><?php echo xlt("Then the raw data feed release can be obtained from"); ?> <b><a href="http://www.nlm.nih.gov/research/umls/rxnorm/docs/rxnormfiles.html"><?php echo xlt("this location"); ?></a></b>
-<li><?php echo xlt("Place the downloaded RxNorm database zip file into the following directory"); ?>: contrib/rxnorm. 
+<li><?php echo xlt("Place the downloaded RxNorm database zip file into the following directory"); ?>: modules/medical_code_sets/rxnorm. 
 </li>
 <li><?php echo xlt("Return to this page and you will be able to complete the RxNorm installation process by clicking on the RXNORM section header"); ?>
 </li>

interface/code_systems/snomed_howto.php

@@ -36,14 +36,14 @@
 <li><?php echo xlt("The first step is to download the SNOMED CT release. Access to SNOMED CT is provided by IHTSDO and their member countries. For more information see") . 
 " <a href='http://www.ihtsdo.org/snomed-ct/get-snomed-ct'>http://www.ihtsdo.org/snomed-ct/get-snomed-ct</a>."; ?> 
 </li>
-<li><?php echo xlt("Place the downloaded Snomed database zip file into the following directory"); ?>: contrib/snomed 
+<li><?php echo xlt("Place the downloaded Snomed database zip file into the following directory"); ?>: modules/medical_code_sets/snomed 
 </li>
 <li><?php echo xlt("Return to this page and you will be able to complete the Snomed installation process by clicking on the SNOMED section header"); ?>
 </li>
 </ol>
 <h5 class="error_msg"><?php echo xlt("NOTE: Only the Biannual International Snomed Release is currently supported"); ?></h5>
 <h5 class="error_msg"><?php echo xlt("The following International Snomed Release languages are supported"); ?>: <?php echo xlt("English"); ?>, <?php echo xlt("Spanish"); ?></h5>
 <h5 class="error_msg"><?php echo "(" . xlt("Additionally, the corresponding US Snomed Extension Package can be imported separately after installing the International (English version) Snomed Release") . ")"; ?></h5>
-<h5 class="error_msg"><?php echo xlt("WARNING: If you are using the 2012-10-31 Spanish version, then note you need to unzip it once before placing it in the contrib/snomed (this is because the released file was \"double-zipped\")."); ?></h5>
+<h5 class="error_msg"><?php echo xlt("WARNING: If you are using the 2012-10-31 Spanish version, then note you need to unzip it once before placing it in the modules/medical_code_sets/snomed (this is because the released file was \"double-zipped\")."); ?></h5>
 </p>
 </div>

interface/code_systems/standard_tables_manage.php

@@ -52,7 +52,7 @@
 $file_revision_date = isset($_GET['file_revision_date']) ? $_GET['file_revision_date'] : '0';
 $file_checksum = isset($_GET['file_checksum']) ? $_GET['file_checksum'] : '0';
 $newInstall =   isset($_GET['newInstall']) ? $_GET['newInstall'] : '0';
-$mainPATH = $GLOBALS['fileroot']."/contrib/".strtolower($db);
+$mainPATH = $GLOBALS['fileroot']."/modules/medical_code_sets/".strtolower($db);
 
 $files_array = scandir($mainPATH);
 array_shift($files_array); // get rid of "."

interface/fax/fax_dispatch.php

@@ -200,8 +200,7 @@ function mergeTiffs() {
       }
 
       if (!$info_msg) {
-        // The following is cloned from contrib/forms/scanned_notes/new.php:
-        //
+// scanned notes must be installed, and does not natively exist.
         $query = "INSERT INTO form_scanned_notes ( " .
           "notes " .
           ") VALUES ( " .

library/classes/Installer.class.php

@@ -8,8 +8,6 @@ class Installer
   public function __construct( $cgi_variables )
   {
     // Installation variables
-    // For a good explanation of these variables, see documentation in
-    //   the contrib/util/installScripts/InstallerAuto.php file.
     $this->iuser                    = $cgi_variables['iuser'];
     $this->iuserpass                = $cgi_variables['iuserpass'];
     $this->iuname                   = $cgi_variables['iuname'];
@@ -40,7 +38,7 @@ public function __construct( $cgi_variables )
 
     // Record names of sql table files
     $this->main_sql = dirname(__FILE__) . '/../../sql/database.sql';
-    $this->translation_sql = dirname(__FILE__) . '/../../contrib/util/language_translations/currentLanguage_utf8.sql';
+    $this->translation_sql = dirname(__FILE__) . '/../../modules/language_translations/currentLanguage_utf8.sql';
     $this->devel_translation_sql = "http://opensourceemr.com/cvs/languageTranslations_utf8.sql";
     $this->ippf_sql = dirname(__FILE__) . "/../../sql/ippf_layout.sql";
     $this->icd9 = dirname(__FILE__) . "/../../sql/icd9.sql";