Add source-related files for STalign 1.0.1

stalign/1.0.1/.gitignore

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+stalign_env

stalign/1.0.1/README.md

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+```bash
+## Commands used for installing the software
+
+#   Make sure not to rely on user packages
+export PYTHONNOUSERSITE="some_value"
+
+#   Start with a basic conda environment with just python 3.8
+module load conda/3-23.3.1
+conda create -y -p stalign_env python=3.8
+
+#   Install STalign and its dependencies, then add some libraries I use
+conda activate ./stalign_env
+pip install --upgrade "git+https://github.com/JEFworks-Lab/STalign.git"
+pip install session_info pyhere openpyxl
+conda deactivate
+
+echo 'stalign_env' > .gitignore
+
+#   Set open permissions, except don't allow writing that could corrupt the
+#   conda environment for everyone
+chmod 775 README.md .gitignore .
+chmod 555 -R stalign_env
+
+## Version control files
+git add .gitignore
+git add README.md
+```
+
+```bash
+## Evaluate the following commands
+module list
+date
+echo "User: ${USER}"
+echo "Hostname: ${HOSTNAME}"
+```
+
+```bash
+$ module list
+
+Currently Loaded Modules:
+  1) JHPCE_ROCKY9_DEFAULT_ENV   2) JHPCE_tools/3.0   3) conda/3-23.3.1
+
+
+
+$ date
+Tue Mar 26 09:02:42 AM EDT 2024
+$ echo "User: ${USER}"
+User: neagles
+$ echo "Hostname: ${HOSTNAME}"
+Hostname: compute-098.cm.cluster
+```