Add source-related files for Samui 1.0.0-next.49

samui/1.0.0-next.49/.gitignore

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+samui*

samui/1.0.0-next.49/README.md

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+# Installation
+
+```bash
+## Commands used for installing the software
+
+#   Make sure not to rely on user packages
+export PYTHONNOUSERSITE="some_value"
+
+#   Pull Samui v1.0.0-next.49
+wget https://github.com/chaichontat/samui/archive/refs/tags/v1.0.0-next.49.tar.gz
+tar -xzf v1.0.0-next.49.tar.gz
+rm v1.0.0-next.49.tar.gz
+mv samui-1.0.0-next.49 samui
+
+# Use mamba, which will be faster
+module load conda/3-23.3.1
+conda create -n mamba_env -c conda-forge mamba
+conda activate mamba_env
+
+#   Create a conda environment with the recommended dependencies
+mamba env create -p samui_env -f samui/environment.yml
+
+#   Add a couple python packages
+conda activate ./samui_env
+pip install pyhere session_info openpyxl lxml pypng
+conda deactivate
+
+## Ignore all downloaded/installed files
+echo "samui*" > .gitignore
+
+#   Set open permissions, except don't allow writing that could corrupt the
+#   conda environment for everyone
+chmod 775 -R samui README.md .gitignore .
+chmod 555 -R samui_env
+
+## Version control files
+git add .gitignore
+git add README.md
+```
+
+# Reproducibility
+
+```bash
+## Evaluate the following commands
+module list
+date
+echo "User: ${USER}"
+echo "Hostname: ${HOSTNAME}"
+```
+
+```bash
+## copy paste the output from the previous commands
+$ module list
+
+Currently Loaded Modules:
+  1) JHPCE_ROCKY9_DEFAULT_ENV   2) JHPCE_tools/3.0   3) conda/3-23.3.1
+
+
+
+$ date
+Wed Mar 20 10:44:53 AM EDT 2024
+$ echo "User: ${USER}"
+User: neagles
+$ echo "Hostname: ${HOSTNAME}"
+Hostname: compute-105.cm.cluster
+```