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Add singularity image for CIBERSORTx fractions (no provided version n…
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…umber, so using date of upload to dockerhub)
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Nick-Eagles committed Feb 8, 2024
1 parent e5c6911 commit 5290e9f
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1 change: 1 addition & 0 deletions cibersortx/04_04_2020/.gitignore
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fractions_latest.sif
45 changes: 45 additions & 0 deletions cibersortx/04_04_2020/README.md
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# Installation

```bash
## Commands used for installing the software

module load singularity/3.11.4
singularity pull docker://cibersortx/fractions # no version name is provided

## Ignore all downloaded/installed files
echo "fractions_latest.sif" > .gitignore

# Set loose permissions
chmod 775 -R ..

## Version control files
git add .gitignore
git add README.md
```

# Reproducibility

```bash
## Evaluate the following commands
module list
date
echo "User: ${USER}"
echo "Hostname: ${HOSTNAME}"
```

```bash
## copy paste the output from the previous commands
$ module list

Currently Loaded Modules:
1) JHPCE_ROCKY9_DEFAULT_ENV 2) JHPCE_tools/3.0 3) singularity/3.11.4



$ date
Thu Feb 8 01:47:31 PM EST 2024
$ echo "User: ${USER}"
User: neagles
$ echo "Hostname: ${HOSTNAME}"
Hostname: compute-124.cm.cluster
```

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