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Add singularity image for CIBERSORTx fractions (no provided version n…
…umber, so using date of upload to dockerhub)
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fractions_latest.sif |
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# Installation | ||
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```bash | ||
## Commands used for installing the software | ||
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module load singularity/3.11.4 | ||
singularity pull docker://cibersortx/fractions # no version name is provided | ||
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## Ignore all downloaded/installed files | ||
echo "fractions_latest.sif" > .gitignore | ||
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# Set loose permissions | ||
chmod 775 -R .. | ||
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## Version control files | ||
git add .gitignore | ||
git add README.md | ||
``` | ||
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# Reproducibility | ||
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```bash | ||
## Evaluate the following commands | ||
module list | ||
date | ||
echo "User: ${USER}" | ||
echo "Hostname: ${HOSTNAME}" | ||
``` | ||
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```bash | ||
## copy paste the output from the previous commands | ||
$ module list | ||
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Currently Loaded Modules: | ||
1) JHPCE_ROCKY9_DEFAULT_ENV 2) JHPCE_tools/3.0 3) singularity/3.11.4 | ||
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$ date | ||
Thu Feb 8 01:47:31 PM EST 2024 | ||
$ echo "User: ${USER}" | ||
User: neagles | ||
$ echo "Hostname: ${HOSTNAME}" | ||
Hostname: compute-124.cm.cluster | ||
``` |