Ran chmod -R 775 .

LieberInstitute · Jun 6, 2022 · b890000 · b890000
1 parent 1bf5de7
commit b890000
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Showing 24 changed files with 7 additions and 4 deletions.
diff --git a/FastQC/0.11.5/.gitignore b/FastQC/0.11.5/.gitignore
diff --git a/FastQC/0.11.5/README.md b/FastQC/0.11.5/README.md
diff --git a/FastQC/0.11.8/.gitignore b/FastQC/0.11.8/.gitignore
diff --git a/FastQC/0.11.8/README.md b/FastQC/0.11.8/README.md
diff --git a/Salmon/0.11.3/.gitignore b/Salmon/0.11.3/.gitignore
diff --git a/Salmon/0.11.3/README.md b/Salmon/0.11.3/README.md
diff --git a/Salmon/0.8.2/.gitignore b/Salmon/0.8.2/.gitignore
diff --git a/Salmon/0.8.2/README.md b/Salmon/0.8.2/README.md
diff --git a/gatk/4.2.0.0/.gitignore b/gatk/4.2.0.0/.gitignore
diff --git a/gatk/4.2.0.0/README.md b/gatk/4.2.0.0/README.md
diff --git a/gtex-pipeline/dae3369/.gitignore b/gtex-pipeline/dae3369/.gitignore
diff --git a/kallisto/0.43.0/.gitignore b/kallisto/0.43.0/.gitignore
diff --git a/kallisto/0.43.0/README.md b/kallisto/0.43.0/README.md
diff --git a/kallisto/0.44.0/.gitignore b/kallisto/0.44.0/.gitignore
diff --git a/kallisto/0.44.0/README.md b/kallisto/0.44.0/README.md
diff --git a/nextflow/20.01.0/.gitignore b/nextflow/20.01.0/.gitignore
diff --git a/picard/2.25.5/.gitignore b/picard/2.25.5/.gitignore
diff --git a/qctool/2.0.7/.gitignore b/qctool/2.0.7/.gitignore
diff --git a/rmate/1.5.10/.gitignore b/rmate/1.5.10/.gitignore
diff --git a/rmate/1.5.10/README.md b/rmate/1.5.10/README.md
@@ -7,6 +7,8 @@ git clone [email protected]:textmate/rmate.git
 ## Ignore all downloaded/installed files
 echo "rmate" >> .gitignore
 
+chmod -R 775 .
+
 ## Version control files
 git add .gitignore
 git add README.md
@@ -26,15 +28,16 @@ echo "Hostname: ${HOSTNAME}"
 $ module list
 
 Currently Loaded Modules:
-  1) matlab/R2019a   3) JHPCE_tools/1.0   5) gcc/4.4.7                       7) JHPCE_CENTOS7_DEFAULT_ENV
-  2) stata/16        4) sge/8.1.9         6) COMMUNITY_CENTOS7_DEFAULT_ENV   8) git/2.17.0
+  1) matlab/R2019a     4) sge/8.1.9                       7) JHPCE_CENTOS7_DEFAULT_ENV  10) git-lfs/2.8.0   13) conda_R/devel
+  2) stata/17          5) gcc/4.4.7                       8) git-status-size/github     11) rmate/1.5.9
+  3) JHPCE_tools/1.0   6) COMMUNITY_CENTOS7_DEFAULT_ENV   9) git/2.28.0                 12) conda/3-4.6.14
 
 
 
 $ date
-Thu Aug 29 10:40:40 EDT 2019
+Mon Jun  6 16:09:54 EDT 2022
 $ echo "User: ${USER}"
 User: lcollado
 $ echo "Hostname: ${HOSTNAME}"
-Hostname: compute-070.cm.cluster
+Hostname: compute-093.cm.cluster
 ```
diff --git a/subread/1.5.0-p3/.gitignore b/subread/1.5.0-p3/.gitignore
diff --git a/subread/1.5.0-p3/README.md b/subread/1.5.0-p3/README.md
diff --git a/subread/1.6.3/.gitignore b/subread/1.6.3/.gitignore
diff --git a/subread/1.6.3/README.md b/subread/1.6.3/README.md