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Uninstall adata (meant to install anndata) and add bin2cell to the HE…
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…RGAST module
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Nick-Eagles committed Oct 29, 2024
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5 changes: 3 additions & 2 deletions hergast/0.0.1/README.md
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Expand Up @@ -10,11 +10,12 @@ git clone https://github.com/GYQ-form/HERGAST.git
module load conda/3-24.3.0
conda create -y -p hergast_env python=3.9

# Install HERGAST, then add some libraries I use
# Install HERGAST, then add some libraries I use. bin2cell is installed for
# its ability to read Visium HD data
conda activate ./hergast_env
cd HERGAST
pip install .
pip install session_info pyhere adata
pip install session_info pyhere bin2cell==0.3.0
cd ..

conda deactivate
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