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Add a python package and allow others to do the same
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Nick-Eagles committed Mar 10, 2023
1 parent b6a4ca2 commit e3c6f32
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8 changes: 4 additions & 4 deletions graphst/da29b75/README.md
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Expand Up @@ -24,7 +24,7 @@ pip install torch==1.11.0+cu113 -f https://download.pytorch.org/whl/torch_stable

# GraphST and additional dependencies
pip install GraphST
pip install numpy pandas scikit-learn scanpy pot
pip install numpy pandas scikit-learn scanpy pot scikit-misc

conda deactivate

Expand All @@ -33,9 +33,9 @@ echo "graphst_env" > .gitignore

chmod -R 775 /jhpce/shared/jhpce/libd/graphst

# Remove write permissions on conda environment to prevent accidental 'pip' or
# 'conda' commands from permanently changing the module for all users
chmod -R 755 /jhpce/shared/jhpce/libd/graphst/da29b75/graphst_env
# For now, allow anyone to modify the conda environment (to allow
# 'pip install' if a python package is missing)
chmod -R 777 /jhpce/shared/jhpce/libd/graphst/da29b75/graphst_env

## Version control files
git add .gitignore
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