Add source-related files for cellranger 8.0.1

cellranger/8.0.1/.gitignore

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+cellranger-8.0.1

cellranger/8.0.1/README.md

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+# Installation
+
+```bash
+## Commands used for installing the software
+#   Note: this uses a temporary download link generated after entering some
+#   information and agreeing to terms of use
+curl -o cellranger-8.0.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-8.0.1.tar.gz?Expires=1729826286&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=NEDneyCsgwNbl7-d5rYnv77NveZxVXvBUdiDk6Po7EsaRGuqQQNGRXyEOEh3dwgy3z0B3rMPjHb8dof5i4EraOlfdfIy~qzC0n2VsS01xmw7iAVTsNyFvVj5bFKBIZa47xOEJRg7hwj3aUL1E2pgzF2zLIOlARcwvw~w8CGydz2PrVZBOBXt9yAkqgFUwuNZaDaMB7BmRwD75x14ZhfbzS6qHQQw40zmpSxgWm2h8mbBAEK6dwu7CMdfnT8f0rVuAlYRgkVQyvKLgNWgxDkB6VbGyVMyoflrklR98a-VAUd5kirV1~XnP0kBxmAyPpzXgB0y0zGaddacrZqgPUN~sg__"
+tar -xzf cellranger-8.0.1.tar.gz
+rm cellranger-8.0.1.tar.gz
+
+# A 10x-compatible reference genome is also required, and we install these as
+# needed from here:
+#
+# https://support.10xgenomics.com/single-cell-gene-expression/software/downloads/latest
+#
+# into /dcs04/lieber/lcolladotor/annotationFiles_LIBD001/10x.
+
+## Ignore all downloaded/installed files
+echo "cellranger-8.0.1" > .gitignore
+chmod -R 775 .
+
+## Version control files
+git add .gitignore
+git add README.md
+```
+
+# Reproducibility
+
+```bash
+## Evaluate the following commands
+module list
+date
+echo "User: ${USER}"
+echo "Hostname: ${HOSTNAME}"
+```
+
+```bash
+## copy paste the output from the previous commands
+$ module list
+
+Currently Loaded Modules:
+  1) JHPCE_ROCKY9_DEFAULT_ENV   2) JHPCE_tools/3.0
+
+
+
+$ date
+Thu Oct 24 11:20:25 AM EDT 2024
+$ echo "User: ${USER}"
+User: neagles
+$ echo "Hostname: ${HOSTNAME}"
+Hostname: compute-162.cm.cluster
+```