-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Add source files for spaceranger 1.3.0
- Loading branch information
1 parent
800bff0
commit f3e5708
Showing
2 changed files
with
53 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1 @@ | ||
spaceranger-1.3.0 |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,52 @@ | ||
# Installation | ||
|
||
```bash | ||
## Commands used for installing the software | ||
|
||
# The download link here is a temporary link produced after providing an email | ||
# and agreeing to some terms of use. New users would have to provide this info | ||
# to generate a similar link, starting at: | ||
# | ||
# https://support.10xgenomics.com/spatial-gene-expression/software/downloads/latest | ||
wget -O spaceranger-1.3.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.0.tar.gz?Expires=1623389938&Policy=eyJTdGF0ZW1lbnQiOlt7IlJlc291cmNlIjoiaHR0cHM6Ly9jZi4xMHhnZW5vbWljcy5jb20vcmVsZWFzZXMvc3BhdGlhbC1leHAvc3BhY2VyYW5nZXItMS4zLjAudGFyLmd6IiwiQ29uZGl0aW9uIjp7IkRhdGVMZXNzVGhhbiI6eyJBV1M6RXBvY2hUaW1lIjoxNjIzMzg5OTM4fX19XX0_&Signature=MpyeZB-l3KAXIEcFAwR9lXWoddOz6zG2vSXLK9yhVQ2MKvmqAve-DY0Txw9q3TjQJe5uO-0Lo~NcGuMf5zLkHWtZWJ7DNdcx0PKA8Ddr23OStEHXfuVzbrZbl33q~NYoS17HP-E5R75l4awBvNLY7U6q~xEBDRPcxAyF8S5ete7ukBUNdW2qPgw2ytGGPwH93GSdNTo2sUfNaRpcNP3jYElE1oNyVO9GasaZxG-YJw3jSQphEpNSzgpOdYagU2Cw7io2X6eBxS8uAPtbQ5mDYUnG2fSUOiDhiH-FX4fAmoXU5ZY4hfAn-S-xsQSRZkKtq1gDi5M-6TNvC2u~tb21Rg__&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA" | ||
|
||
tar -xzf spaceranger-1.3.0.tar.gz | ||
rm spaceranger-1.3.0.tar.gz | ||
|
||
## Ignore all downloaded/installed files | ||
echo "spaceranger-1.3.0" >> .gitignore | ||
|
||
## Version control files | ||
git add .gitignore | ||
git add README.md | ||
``` | ||
|
||
# Reproducibility | ||
|
||
```bash | ||
## Evaluate the following commands | ||
module list | ||
date | ||
echo "User: ${USER}" | ||
echo "Hostname: ${HOSTNAME}" | ||
``` | ||
|
||
```bash | ||
## copy paste the output from the previous commands | ||
$ module list | ||
|
||
Currently Loaded Modules: | ||
1) matlab/R2019a 5) gcc/4.4.7 | ||
2) stata/16 6) COMMUNITY_CENTOS7_DEFAULT_ENV | ||
3) JHPCE_tools/1.0 7) JHPCE_CENTOS7_DEFAULT_ENV | ||
4) sge/8.1.9 | ||
|
||
$ date | ||
Thu Jun 10 13:46:04 EDT 2021 | ||
|
||
$ echo "User: ${USER}" | ||
User: neagles | ||
|
||
$ echo "Hostname: ${HOSTNAME}" | ||
Hostname: compute-065.cm.cluster | ||
``` |