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spatula |
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# Installation | ||
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```bash | ||
## Commands used for installing the software | ||
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## clone the repository (at a time where the latest commit was 7f37171) | ||
git clone --recursive https://github.com/seqscope/spatula.git | ||
cd spatula | ||
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## build the submodules | ||
cd submodules | ||
sh -x build.sh | ||
cd .. | ||
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## build spatula | ||
mkdir build | ||
cd build | ||
cmake .. | ||
make | ||
cd ../.. | ||
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## Ignore all downloaded/installed files | ||
echo "spatula" > .gitignore | ||
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chmod 775 -R . | ||
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## Version control files | ||
git add .gitignore | ||
git add README.md | ||
``` | ||
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# Reproducibility | ||
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```bash | ||
## Evaluate the following commands | ||
module list | ||
date | ||
echo "User: ${USER}" | ||
echo "Node name: ${HOSTNAME}" | ||
``` | ||
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```bash | ||
## copy paste the output from the previous commands | ||
$ module list | ||
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Currently Loaded Modules: | ||
1) JHPCE_ROCKY9_DEFAULT_ENV 2) JHPCE_tools/3.0 | ||
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$ date | ||
Fri Oct 11 02:33:37 PM EDT 2024 | ||
$ echo "User: ${USER}" | ||
User: neagles | ||
$ echo "Node name: ${HOSTNAME}" | ||
Node name: compute-156.cm.cluster | ||
``` |