Update GHA for bioc 3.20 #407
Annotations
9 errors and 6 warnings
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Setup R from r-lib
No such keg: /opt/homebrew/Cellar/[email protected]
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Install dependencies pass 2
--- re-building ‘guide_to_spatial_registration.Rmd’ using rmarkdown
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Install dependencies pass 2
processing vignette 'guide_to_spatial_registration.Rmd' failed with diagnostics:
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Install dependencies pass 2
processing vignette 'multi_gene_plots.Rmd' failed with diagnostics:
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Install dependencies pass 2
processing vignette 'spatialLIBD.Rmd' failed with diagnostics:
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Install dependencies pass 2
processing vignette 'TenX_data_download.Rmd' failed with diagnostics:
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Install dependencies pass 2
Vignette re-building failed.
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Install dependencies pass 2
Failed to install 'spatialLIBD' from local:
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Install dependencies pass 2
Process completed with exit code 1.
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Upload check results
No files were found with the provided path: check. No artifacts will be uploaded.
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Setup R from r-lib
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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Setup R from r-lib
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Install macOS system dependencies
harfbuzz 10.1.0 is already installed and up-to-date.
To reinstall 10.1.0, run:
brew reinstall harfbuzz
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Install macOS system dependencies
fribidi 1.0.16 is already installed and up-to-date.
To reinstall 1.0.16, run:
brew reinstall fribidi
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Install macOS system dependencies
macOS's Gatekeeper has been disabled for this Cask
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