MADscientist314 / tensorflow_basecaller Public

An attempt at using machine learning to improve the accuracy of basecalling from nanopore sequencing

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Name		Name	Last commit message	Last commit date
Latest commit History 15 Commits
.ipynb_checkpoints		.ipynb_checkpoints
__pycache__		__pycache__
fast5		fast5
fasta		fasta
fastq		fastq
signal		signal
training_1		training_1
training_10		training_10
training_11		training_11
training_12		training_12
training_2		training_2
.gitignore		.gitignore
.ipynb		.ipynb
0_data_handler.ipynb		0_data_handler.ipynb
1_tensorflow.ipynb		1_tensorflow.ipynb
1_trainset_maker.ipynb		1_trainset_maker.ipynb
Jochum_2_machine_learning.ipynb		Jochum_2_machine_learning.ipynb
Jochum_3_nanopolish.ipynb		Jochum_3_nanopolish.ipynb
LICENSE		LICENSE
Parsing_reads_intelligently.ipynb		Parsing_reads_intelligently.ipynb
README.md		README.md
SignalMetaData.ipynb		SignalMetaData.ipynb
Untitled.ipynb		Untitled.ipynb
Untitled1.ipynb		Untitled1.ipynb
basecaller-5mer.ipynb		basecaller-5mer.ipynb
basecaller.ipynb		basecaller.ipynb
basecaller.py		basecaller.py
basecaller_meta.ipynb		basecaller_meta.ipynb
cuda_10.0.130_win10_network.exe		cuda_10.0.130_win10_network.exe
history		history
jochumbasecaller-5mer.ipynb		jochumbasecaller-5mer.ipynb
model		model
nanopolish_data_handler.ipynb		nanopolish_data_handler.ipynb
tensorflow_basecaller.git		tensorflow_basecaller.git