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ME-ICA · Apr 2, 2024 · 4f9914c · 4f9914c
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diff --git a/_sources/content/00_Download_Data.ipynb b/_sources/content/00_Download_Data.ipynb
diff --git a/_sources/content/01_Optimal_Combination_with_t2smap.ipynb b/_sources/content/01_Optimal_Combination_with_t2smap.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "cdcf0cb2",
+   "id": "42414d96",
    "metadata": {},
    "source": [
     "# Optimal combination with `t2smap`\n",
@@ -13,7 +13,7 @@
   {
    "cell_type": "code",
    "execution_count": 1,
-   "id": "754699ac",
+   "id": "f316db0b",
    "metadata": {},
    "outputs": [
     {
@@ -54,7 +54,7 @@
   {
    "cell_type": "code",
    "execution_count": 2,
-   "id": "57aad9d0",
+   "id": "178e0ec2",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -91,7 +91,7 @@
   {
    "cell_type": "code",
    "execution_count": 3,
-   "id": "6a128796",
+   "id": "5a2512ab",
    "metadata": {},
    "outputs": [
     {
@@ -158,7 +158,7 @@
   {
    "cell_type": "code",
    "execution_count": 4,
-   "id": "55f211e7",
+   "id": "7951cf16",
    "metadata": {},
    "outputs": [
     {
@@ -184,7 +184,7 @@
   {
    "cell_type": "code",
    "execution_count": 5,
-   "id": "28415b76",
+   "id": "b2102c45",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -202,7 +202,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "0039d232",
+   "id": "34a44cfe",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_t2starmap\n",
@@ -216,7 +216,7 @@
   {
    "cell_type": "code",
    "execution_count": 6,
-   "id": "10cf7b0e",
+   "id": "c6d2a8f9",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -234,7 +234,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "07afcc5c",
+   "id": "0fb73988",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_s0map\n",
@@ -248,7 +248,7 @@
   {
    "cell_type": "code",
    "execution_count": 7,
-   "id": "995c381b",
+   "id": "7c3b25a1",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -307,7 +307,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "28d2e05e",
+   "id": "d3ae11fe",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_t2smap_epi_plots\n",
@@ -321,7 +321,7 @@
   {
    "cell_type": "code",
    "execution_count": 8,
-   "id": "5dc8e336",
+   "id": "6467503c",
    "metadata": {},
    "outputs": [
     {
@@ -385,7 +385,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "db1d1620",
+   "id": "2fa0dbc6",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_t2smap_t2snr\n",
@@ -399,7 +399,7 @@
   {
    "cell_type": "code",
    "execution_count": 9,
-   "id": "45445223",
+   "id": "81941c67",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -414,7 +414,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "6332b4f4",
+   "id": "1eccd1b4",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_echo2_carpet\n",
@@ -428,7 +428,7 @@
   {
    "cell_type": "code",
    "execution_count": 10,
-   "id": "78f86a01",
+   "id": "1a2b224c",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -442,7 +442,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "c6b8b2a2",
+   "id": "4bd51653",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_optcom_carpet\n",

diff --git a/_sources/content/02_Volume-wise_T2star_estimation_with_t2smap.ipynb b/_sources/content/02_Volume-wise_T2star_estimation_with_t2smap.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "c6248d17",
+   "id": "86384732",
    "metadata": {},
    "source": [
     "# Volume-wise T2*/S0 estimation with `t2smap`\n",
@@ -14,7 +14,7 @@
   {
    "cell_type": "code",
    "execution_count": 1,
-   "id": "d73b07e5",
+   "id": "a1167715",
    "metadata": {},
    "outputs": [
     {
@@ -55,7 +55,7 @@
   {
    "cell_type": "code",
    "execution_count": 2,
-   "id": "8541887b",
+   "id": "801adab4",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -92,7 +92,7 @@
   {
    "cell_type": "code",
    "execution_count": 3,
-   "id": "99abce5f",
+   "id": "1967cc9b",
    "metadata": {},
    "outputs": [
     {
@@ -160,7 +160,7 @@
   {
    "cell_type": "code",
    "execution_count": 4,
-   "id": "5749836b",
+   "id": "99eb5394",
    "metadata": {},
    "outputs": [
     {
@@ -186,7 +186,7 @@
   {
    "cell_type": "code",
    "execution_count": 5,
-   "id": "d3a3b99d",
+   "id": "cca31608",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -221,7 +221,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "68f8350f",
+   "id": "198c4e9b",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_volumewise_t2ss0_carpets\n",
@@ -235,7 +235,7 @@
   {
    "cell_type": "code",
    "execution_count": 6,
-   "id": "019dd6c2",
+   "id": "45912136",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -255,7 +255,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "2fbba307",
+   "id": "36f120f7",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_mean_volumewise_t2s\n",
@@ -269,7 +269,7 @@
   {
    "cell_type": "code",
    "execution_count": 7,
-   "id": "2ef60469",
+   "id": "cc730791",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -289,7 +289,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "7884c887",
+   "id": "d2e0a3ba",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_mean_volumewise_s0\n",
@@ -303,7 +303,7 @@
   {
    "cell_type": "code",
    "execution_count": 8,
-   "id": "90c31403",
+   "id": "5838784e",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -357,7 +357,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "5b08dc21",
+   "id": "bc0277a1",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_mean_echos_and_optcom\n",
@@ -371,7 +371,7 @@
   {
    "cell_type": "code",
    "execution_count": 9,
-   "id": "682b215a",
+   "id": "4580a5b3",
    "metadata": {},
    "outputs": [
     {
@@ -433,7 +433,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "2722c71e",
+   "id": "4eea8d2b",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_t2snr_te30_and_optcom\n",
@@ -447,7 +447,7 @@
   {
    "cell_type": "code",
    "execution_count": 10,
-   "id": "1fdcd0b6",
+   "id": "1acbbd36",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -461,7 +461,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "8cc817dc",
+   "id": "3199decb",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_echo3_carpet\n",
@@ -475,7 +475,7 @@
   {
    "cell_type": "code",
    "execution_count": 11,
-   "id": "aec4f9d3",
+   "id": "358302a0",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -489,7 +489,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "876e4d76",
+   "id": "0dfbfd23",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_carpet_optcom\n",