deploy: f56e855

_sources/content/00_Download_Data.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "c009ceea",
+   "id": "b4ce3fa7",
    "metadata": {},
    "source": [
     "# Download Data\n",
@@ -40,7 +40,7 @@
   {
    "cell_type": "code",
    "execution_count": 1,
-   "id": "0f41cf5f",
+   "id": "cbea34c9",
    "metadata": {},
    "outputs": [
     {
@@ -63,7 +63,7 @@
      "text": [
       "Downloading...\n",
       "From (original): https://drive.google.com/uc?id=1SVPP1vd2UobKf1djztpi-DcYAFOFXQtF\n",
-      "From (redirected): https://drive.google.com/uc?id=1SVPP1vd2UobKf1djztpi-DcYAFOFXQtF&confirm=t&uuid=74e32a11-b046-4d4d-9508-1d1463aaf0ea\n",
+      "From (redirected): https://drive.google.com/uc?id=1SVPP1vd2UobKf1djztpi-DcYAFOFXQtF&confirm=t&uuid=e78f3b14-c2b9-43e3-8b80-44b7783fb200\n",
       "To: /home/runner/work/multi-echo-data-analysis/multi-echo-data-analysis/data/multi-echo-data-analysis/sub-04570.zip\n",
       "\r",
       "  0%|          | 0.00/315M [00:00<?, ?B/s]"
@@ -74,97 +74,114 @@
      "output_type": "stream",
      "text": [
       "\r",
-      "  2%|▏         | 4.72M/315M [00:00<00:22, 13.5MB/s]\r",
-      "  8%|▊         | 26.2M/315M [00:00<00:04, 71.7MB/s]"
+      "  2%|▏         | 4.72M/315M [00:00<00:22, 14.0MB/s]\r",
+      "  3%|▎         | 8.91M/315M [00:00<00:14, 20.8MB/s]"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
       "\r",
-      " 13%|█▎        | 39.3M/315M [00:00<00:04, 63.7MB/s]\r",
-      " 16%|█▌        | 50.9M/315M [00:00<00:04, 65.1MB/s]"
+      "  9%|▉         | 28.3M/315M [00:00<00:04, 69.8MB/s]\r",
+      " 12%|█▏        | 38.8M/315M [00:00<00:04, 67.6MB/s]"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
       "\r",
-      " 22%|██▏       | 67.6M/315M [00:01<00:03, 67.6MB/s]\r",
-      " 28%|██▊       | 89.1M/315M [00:01<00:02, 96.3MB/s]"
+      " 15%|█▌        | 47.7M/315M [00:00<00:04, 65.8MB/s]\r",
+      " 20%|█▉        | 62.4M/315M [00:00<00:02, 85.5MB/s]"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
       "\r",
-      " 32%|███▏      | 102M/315M [00:01<00:02, 73.8MB/s] \r",
-      " 38%|███▊      | 118M/315M [00:01<00:02, 83.2MB/s]"
+      " 23%|██▎       | 72.9M/315M [00:01<00:03, 71.8MB/s]\r",
+      " 27%|██▋       | 84.4M/315M [00:01<00:02, 77.5MB/s]"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
       "\r",
-      " 43%|████▎     | 135M/315M [00:01<00:02, 82.6MB/s]\r",
-      " 48%|████▊     | 152M/315M [00:01<00:01, 94.4MB/s]"
+      " 30%|██▉       | 93.3M/315M [00:01<00:03, 73.6MB/s]"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
       "\r",
-      " 53%|█████▎    | 167M/315M [00:02<00:01, 106MB/s] "
+      " 32%|███▏      | 102M/315M [00:01<00:04, 51.4MB/s] \r",
+      " 40%|███▉      | 124M/315M [00:01<00:02, 83.0MB/s]"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
       "\r",
-      " 57%|█████▋    | 179M/315M [00:02<00:02, 66.4MB/s]\r",
-      " 62%|██████▏   | 196M/315M [00:02<00:01, 81.9MB/s]"
+      " 43%|████▎     | 136M/315M [00:02<00:02, 72.8MB/s]"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
       "\r",
-      " 66%|██████▌   | 207M/315M [00:02<00:01, 74.5MB/s]\r",
-      " 72%|███████▏  | 227M/315M [00:02<00:00, 90.9MB/s]"
+      " 46%|████▌     | 145M/315M [00:02<00:02, 56.8MB/s]\r",
+      " 51%|█████     | 160M/315M [00:02<00:02, 62.8MB/s]"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
       "\r",
-      " 76%|███████▌  | 239M/315M [00:03<00:00, 87.1MB/s]\r",
-      " 80%|████████  | 252M/315M [00:03<00:00, 89.2MB/s]"
+      " 56%|█████▌    | 177M/315M [00:02<00:01, 77.4MB/s]"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
       "\r",
-      " 86%|████████▌ | 269M/315M [00:03<00:00, 95.0MB/s]"
+      " 62%|██████▏   | 193M/315M [00:02<00:01, 74.1MB/s]\r",
+      " 68%|██████▊   | 213M/315M [00:03<00:01, 95.3MB/s]"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
       "\r",
-      " 91%|█████████ | 286M/315M [00:03<00:00, 90.9MB/s]\r",
-      " 98%|█████████▊| 309M/315M [00:03<00:00, 119MB/s] \r",
-      "100%|██████████| 315M/315M [00:03<00:00, 86.1MB/s]\n"
+      " 72%|███████▏  | 227M/315M [00:03<00:01, 77.7MB/s]\r",
+      " 80%|███████▉  | 250M/315M [00:03<00:00, 105MB/s] "
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "\r",
+      " 84%|████████▍ | 264M/315M [00:03<00:00, 86.4MB/s]\r",
+      " 88%|████████▊ | 277M/315M [00:03<00:00, 89.9MB/s]"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "\r",
+      " 92%|█████████▏| 288M/315M [00:03<00:00, 81.7MB/s]\r",
+      " 97%|█████████▋| 306M/315M [00:04<00:00, 101MB/s] \r",
+      "100%|██████████| 315M/315M [00:04<00:00, 77.4MB/s]\n"
      ]
     },
     {

_sources/content/01_Optimal_Combination_with_t2smap.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "2cfbb70d",
+   "id": "d81205f0",
    "metadata": {},
    "source": [
     "# Optimal combination with `t2smap`\n",
@@ -13,7 +13,7 @@
   {
    "cell_type": "code",
    "execution_count": 1,
-   "id": "d8effc7e",
+   "id": "fbcef229",
    "metadata": {},
    "outputs": [
     {
@@ -54,7 +54,7 @@
   {
    "cell_type": "code",
    "execution_count": 2,
-   "id": "5fa33370",
+   "id": "eafaab95",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -91,7 +91,7 @@
   {
    "cell_type": "code",
    "execution_count": 3,
-   "id": "1f7c3a3b",
+   "id": "05471980",
    "metadata": {},
    "outputs": [
     {
@@ -158,7 +158,7 @@
   {
    "cell_type": "code",
    "execution_count": 4,
-   "id": "9cc57be3",
+   "id": "3056025f",
    "metadata": {},
    "outputs": [
     {
@@ -184,7 +184,7 @@
   {
    "cell_type": "code",
    "execution_count": 5,
-   "id": "77acf695",
+   "id": "836a60bd",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -202,7 +202,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "6909f447",
+   "id": "bff9133c",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_t2starmap\n",
@@ -216,7 +216,7 @@
   {
    "cell_type": "code",
    "execution_count": 6,
-   "id": "0fc1ada6",
+   "id": "296a9cbd",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -234,7 +234,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "fe45c4f1",
+   "id": "b37ae12f",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_s0map\n",
@@ -248,7 +248,7 @@
   {
    "cell_type": "code",
    "execution_count": 7,
-   "id": "e8216048",
+   "id": "fe2f03d7",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -307,7 +307,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "c553a6e7",
+   "id": "654c53b0",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_t2smap_epi_plots\n",
@@ -321,7 +321,7 @@
   {
    "cell_type": "code",
    "execution_count": 8,
-   "id": "ec9e5186",
+   "id": "171ff531",
    "metadata": {},
    "outputs": [
     {
@@ -385,7 +385,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "8920d818",
+   "id": "e0d7af5c",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_t2smap_t2snr\n",
@@ -399,7 +399,7 @@
   {
    "cell_type": "code",
    "execution_count": 9,
-   "id": "ba8ea28e",
+   "id": "055d6435",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -414,7 +414,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "d8f7a5ed",
+   "id": "f6c3791e",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_echo2_carpet\n",
@@ -428,7 +428,7 @@
   {
    "cell_type": "code",
    "execution_count": 10,
-   "id": "d1802379",
+   "id": "8f6edd3b",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -442,7 +442,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "a17435f7",
+   "id": "afae6c6c",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_optcom_carpet\n",