sqlite demo db build #61
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| name: sqlite demo db build | |
| on: | |
| pull_request_review: | |
| types: [submitted] | |
| jobs: | |
| mimic-iv-sqlite: | |
| # only run if PR is approved | |
| if: github.event.review.state == 'approved' | |
| runs-on: ubuntu-20.04 | |
| container: python:3.10 | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - name: Python dependencies | |
| run: | | |
| pip install pandas | |
| - name: Download demo data | |
| uses: ./.github/actions/download-demo | |
| - name: Load icu/hosp data into SQLite | |
| run: | | |
| echo "Running SQLite build." | |
| python ${BUILDCODE_PATH}/import.py | |
| echo `md5sum mimic4.db` | |
| env: | |
| BUILDCODE_PATH: mimic-iv/buildmimic/sqlite |