refactor(netcdf): updates focused on flopy parity #3960

Job	Run time
Build	1m 46s
Check format	1m 12s
Smoke test	6m 16s
Test Intel fortran (ubuntu-22.04)	39m 45s
Test GNU fortran (macos-13, false)	44m 31s
Test Intel fortran (macos-13)	41m 43s
Test GNU fortran (macos-14, false)	32m 55s
Extended testing (ubuntu-22.04)	18m 23s
Test Intel fortran (windows-2022)	32m 57s
Test GNU fortran (macos-14, true)	1h 4m 1s
Extended testing (macos-13)	41m 6s
Test GNU fortran (ubuntu-22.04, false)	38m 1s
Extended testing (windows-2022)	49m 45s
Test GNU fortran (ubuntu-22.04, true)	1h 30m 32s
Test GNU fortran (windows-2022, false)	48m 57s
	9h 11m 50s

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