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Parallel processing in subsample.py #197

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Parallel processing in subsample.py #197

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Commits on Nov 4, 2021

  1. Initial commit

    @rvolden
    rvolden committed Nov 4, 2021
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  2. Merge pull request Magdoll#175 from velociroger-pb/master 

    Added deconcat scripts
    @Magdoll
    Magdoll authored Nov 4, 2021
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Commits on Nov 5, 2021

  1. Initial commit, only isoform counts

    @rvolden
    rvolden committed Nov 5, 2021
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  2. Merge branch 'master' of https://github.com/velociroger-pb/cDNA_Cupcake

    @rvolden
    rvolden committed Nov 5, 2021
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  3. Merge pull request Magdoll#176 from velociroger-pb/master 

    Added script to make Seurat input
    @Magdoll
    Magdoll authored Nov 5, 2021
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Commits on Dec 6, 2021

  1. Ignore .swp files

    @rvolden
    rvolden committed Dec 6, 2021
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  2. Added support for multiprocessing SAM files (previously only worked f… 

    …or BAM)
    @rvolden
    rvolden committed Dec 6, 2021
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Commits on Dec 8, 2021

  1. Changed input and output files to be user specified instead of hardcoded

    @velociroger-pb
    velociroger-pb committed Dec 8, 2021
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  2. Added case for cell bc and UMI tags switching places after dedup

    @velociroger-pb
    velociroger-pb committed Dec 8, 2021
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Commits on Jan 18, 2022

  1. Allow for in/out and switched UMI/BC placement

    @velociroger-pb
    velociroger-pb committed Jan 18, 2022
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  2. Merge pull request Magdoll#181 from velociroger-pb/master 

    Making collapse_isoforms_by_sam.py compatible with SAM file multiprocessing
    @velociroger-pb
    velociroger-pb authored Jan 18, 2022
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Commits on Jan 27, 2022

  1. Initial commit

    @velociroger-pb
    velociroger-pb committed Jan 27, 2022
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Commits on Jan 31, 2022

  1. Fixed args

    @velociroger-pb
    velociroger-pb committed Jan 31, 2022
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Commits on Feb 23, 2022

  1. Fix num entries in matrix file (previously overcounting)

    @velociroger-pb
    velociroger-pb committed Feb 23, 2022
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  2. Merge pull request Magdoll#196 from velociroger-pb/master 

    Fix seurat input script
    @velociroger-pb
    velociroger-pb authored Feb 23, 2022
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Commits on Feb 24, 2022

  1. Parallel processing in subsample.py 

    Adds parallelization to subsampling as this script takes too long to run right now
    @SichongP
    SichongP authored Feb 24, 2022
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Commits on Feb 28, 2022

  1. Actually print out results 

    Actually print out results
    @SichongP
    SichongP authored Feb 28, 2022
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