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Update spatial embeddings #1

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Update spatial embeddings #1

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929dfb3
correct simulator.py font and lovasz_losses.py
katerinavr Oct 31, 2022
a384b0f
Update requirements.txt
katerinavr Nov 2, 2022
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32 changes: 2 additions & 30 deletions requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,47 +1,19 @@
backcall @ file:///home/ktietz/src/ci/backcall_1611930011877/work
certifi==2020.6.20
charset-normalizer==2.0.7
cycler==0.10.0
debugpy @ file:///tmp/build/80754af9/debugpy_1629214122703/work
decorator @ file:///tmp/build/80754af9/decorator_1632776554403/work
entrypoints==0.3
fonttools==4.25.0
idna==3.3
ipykernel @ file:///tmp/build/80754af9/ipykernel_1633534655931/work/dist/ipykernel-6.4.1-py3-none-any.whl
ipython @ file:///tmp/build/80754af9/ipython_1635944169458/work
ipython-genutils @ file:///tmp/build/80754af9/ipython_genutils_1606773439826/work
jedi @ file:///tmp/build/80754af9/jedi_1611333729159/work
jupyter-client @ file:///tmp/build/80754af9/jupyter_client_1630690655192/work
jupyter-core @ file:///tmp/build/80754af9/jupyter_core_1633420104186/work
kiwisolver @ file:///tmp/build/80754af9/kiwisolver_1612281846643/work
matplotlib @ file:///tmp/build/80754af9/matplotlib-suite_1634667019719/work
matplotlib-inline @ file:///tmp/build/80754af9/matplotlib-inline_1628242447089/work
mkl-fft==1.3.1
mkl-random @ file:///tmp/build/80754af9/mkl_random_1626186066731/work
mkl-service==2.4.0
munkres==1.1.4
nest-asyncio @ file:///tmp/build/80754af9/nest-asyncio_1613680548246/work
numpy @ file:///tmp/build/80754af9/numpy_and_numpy_base_1634095651905/work
olefile @ file:///Users/ktietz/demo/mc3/conda-bld/olefile_1629805411829/work
opencv-python==4.5.4.58
pandas==1.3.4
parso @ file:///tmp/build/80754af9/parso_1617223946239/work
pexpect @ file:///tmp/build/80754af9/pexpect_1605563209008/work
pickleshare @ file:///tmp/build/80754af9/pickleshare_1606932040724/work
Pillow==8.4.0
prompt-toolkit @ file:///tmp/build/80754af9/prompt-toolkit_1633440160888/work
ptyprocess @ file:///tmp/build/80754af9/ptyprocess_1609355006118/work/dist/ptyprocess-0.7.0-py2.py3-none-any.whl
Pygments @ file:///tmp/build/80754af9/pygments_1629234116488/work
pyparsing @ file:///tmp/build/80754af9/pyparsing_1635766073266/work
python-dateutil @ file:///tmp/build/80754af9/python-dateutil_1626374649649/work
pytz==2021.3
pyzmq @ file:///tmp/build/80754af9/pyzmq_1628275385016/work
requests==2.26.0
scipy==1.7.2
sip==4.19.13
six @ file:///tmp/build/80754af9/six_1623709665295/work
tornado @ file:///tmp/build/80754af9/tornado_1606942317143/work
sip==5.0.0
tqdm==4.62.3
traitlets @ file:///tmp/build/80754af9/traitlets_1632522747050/work
urllib3==1.26.7
wcwidth @ file:///Users/ktietz/demo/mc3/conda-bld/wcwidth_1629357192024/work
scikit-image==0.19.3
2 changes: 1 addition & 1 deletion src/plot_data_extraction/SpatialEmbeddings/src/criterions/lovasz_losses.py
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Expand Up @@ -23,7 +23,7 @@ def lovasz_grad(gt_sorted):
p = len(gt_sorted)
gts = gt_sorted.sum()
intersection = gts.float() - gt_sorted.float().cumsum(0)
union = gts.float() + (1 - gt_sorted).float().cumsum(0)
union = gts.float() + (~gt_sorted).float().cumsum(0)
jaccard = 1. - intersection / union
if p > 1: # cover 1-pixel case
jaccard[1:p] = jaccard[1:p] - jaccard[0:-1]
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2 changes: 1 addition & 1 deletion src/plot_data_extraction/SpatialEmbeddings/src/simulator.py
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Expand Up @@ -301,7 +301,7 @@ def _params_init(self, **kwargs):
self.char_list.remove('$')
self.num_annotation_line = kwargs.get("num_annotation_line", 4)
self.num_annotation_word = kwargs.get("num_annotation_line", 10)
self.font_type = glob.glob("/usr/share/fonts/truetype/freefont/*.ttf")
self.font_type = glob.glob("/usr/share/fonts/truetype/*/*.ttf")
self.color_dict = {
"r": (255,0,0),
"g": (0,255,0),
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