[pre-commit.ci] pre-commit autoupdate (#2193)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Matthew Evans <[email protected]>

.pre-commit-config.yaml

@@ -29,13 +29,13 @@ repos:
       args: [--markdown-linebreak-ext=md]
 
   - repo: https://github.com/asottile/pyupgrade
-    rev: v3.19.0
+    rev: v3.19.1
     hooks:
     - id: pyupgrade
       args: [--py310-plus]
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: 'v0.7.2'
+    rev: 'v0.9.3'
 
     hooks:
     - id: ruff
@@ -59,7 +59,7 @@ repos:
       description: Update the API Reference documentation whenever a Python file is touched in the code base.
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.13.0
+    rev: v1.14.1
     hooks:
       - id: mypy
         name: "MyPy"

optimade/client/client.py

@@ -1113,7 +1113,7 @@ def _build_url(
         """
 
         if not version:
-            version = f'v{__api_version__.split(".")[0]}'
+            version = f"v{__api_version__.split('.')[0]}"
         while base_url.endswith("/"):
             base_url = base_url[:-1]
 
@@ -1129,7 +1129,7 @@ def _build_url(
                 params_dict["response_fields"] = "response_fields=id"
             else:
                 params_dict["response_fields"] = (
-                    f'response_fields={",".join(response_fields)}'
+                    f"response_fields={','.join(response_fields)}"
                 )
 
         if page_limit:

optimade/server/middleware.py

@@ -242,7 +242,7 @@ async def dispatch(self, request: Request, call_next):
                     base_url = get_base_url(request.url)
 
                     new_request = (
-                        f"{base_url}{version_path}{str(request.url)[len(base_url):]}"
+                        f"{base_url}{version_path}{str(request.url)[len(base_url) :]}"
                     )
                     url = urllib.parse.urlsplit(new_request)
                     q = "&".join(
@@ -354,9 +354,9 @@ def showwarning(
             line: Source content of the line that issued the warning.
 
         """
-        assert isinstance(
-            message, Warning
-        ), "'message' is expected to be a Warning or subclass thereof."
+        assert isinstance(message, Warning), (
+            "'message' is expected to be a Warning or subclass thereof."
+        )
 
         if not isinstance(message, OptimadeWarning):
             # If the Warning is not an OptimadeWarning or subclass thereof,

optimade/utils.py

@@ -64,9 +64,9 @@ def insert_from_jsonl(jsonl_path: Path, create_default_index: bool = False) -> N
     with open(jsonl_path) as handle:
         header = handle.readline()
         header_jsonl = json.loads(header)
-        assert header_jsonl.get(
-            "x-optimade"
-        ), "No x-optimade header, not sure if this is a JSONL file"
+        assert header_jsonl.get("x-optimade"), (
+            "No x-optimade header, not sure if this is a JSONL file"
+        )
 
         for line_no, json_str in enumerate(handle):
             try:

optimade/validator/validator.py

@@ -1039,7 +1039,7 @@ def _test_multi_entry_endpoint(self, endp: str) -> None:
         request_str = f"{endp}?page_limit={self.page_limit}"
 
         if response_fields:
-            request_str += f'&response_fields={",".join(response_fields)}'
+            request_str += f"&response_fields={','.join(response_fields)}"
 
         response, _ = self._get_endpoint(request_str)
 
@@ -1529,7 +1529,7 @@ def _get_endpoint(
             message += "\nAdditional details from implementation:"
             try:
                 for error in response.json().get("errors", []):
-                    message += f'\n  {error.get("title", "N/A")}: {error.get("detail", "N/A")} ({error.get("source", {}).get("pointer", "N/A")})'
+                    message += f"\n  {error.get('title', 'N/A')}: {error.get('detail', 'N/A')} ({error.get('source', {}).get('pointer', 'N/A')})"
             except json.JSONDecodeError:
                 message += f"\n  Could not parse response as JSON. Content type was {response.headers.get('content-type')!r}."
 

tests/models/test_optimade_json.py

@@ -46,9 +46,9 @@ def test_convert_python_types():
         python_types_as_objects,
     ]:
         for index, python_type in enumerate(list_of_python_types):
-            assert isinstance(
-                DataType.from_python_type(python_type), DataType
-            ), f"python_type: {python_type}"
+            assert isinstance(DataType.from_python_type(python_type), DataType), (
+                f"python_type: {python_type}"
+            )
             assert DataType.from_python_type(python_type) == expected_data_type[index]
 
 
@@ -70,9 +70,9 @@ def test_convert_json_types():
 
     for list_of_schema_types in [json_types, openapi_formats]:
         for schema_type, optimade_type in list_of_schema_types:
-            assert isinstance(
-                DataType.from_json_type(schema_type), DataType
-            ), f"json_type: {schema_type}"
+            assert isinstance(DataType.from_json_type(schema_type), DataType), (
+                f"json_type: {schema_type}"
+            )
             assert DataType.from_json_type(schema_type) == optimade_type
 
 

tests/server/conftest.py

@@ -96,9 +96,9 @@ def inner(
             response_json = response.json()
             assert response.status_code == 200, f"Request failed: {response_json}"
             expected_mime_type = "application/vnd.api+json"
-            assert (
-                response.headers["content-type"] == expected_mime_type
-            ), f"Response should have MIME type {expected_mime_type!r}, not {response.headers['content-type']!r}."
+            assert response.headers["content-type"] == expected_mime_type, (
+                f"Response should have MIME type {expected_mime_type!r}, not {response.headers['content-type']!r}."
+            )
         except json.JSONDecodeError:
             print(
                 f"Request attempted:\n{used_client.base_url}{used_client.version}"
@@ -220,9 +220,9 @@ def inner(
                 f"but instead {response.status_code} was received.\nResponse:\n{response.json()}",
             )
             expected_mime_type = "application/vnd.api+json"
-            assert (
-                response.headers["content-type"] == expected_mime_type
-            ), f"Response should have MIME type {expected_mime_type!r}, not {response.headers['content-type']!r}."
+            assert response.headers["content-type"] == expected_mime_type, (
+                f"Response should have MIME type {expected_mime_type!r}, not {response.headers['content-type']!r}."
+            )
 
             response = response.json()
             assert len(response["errors"]) == 1, response.get(

tests/server/middleware/test_api_hint.py

@@ -123,7 +123,7 @@ def test_handle_api_hint():
         )
 
     with pytest.raises(VersionNotSupported):
-        api_hint = f"v{int(BASE_URL_PREFIXES['major'][len('/v'):]) + 1}"
+        api_hint = f"v{int(BASE_URL_PREFIXES['major'][len('/v') :]) + 1}"
         HandleApiHint.handle_api_hint([api_hint])
 
     api_hint = "v0"

tests/server/middleware/test_cors.py

@@ -3,9 +3,9 @@
 
 def test_regular_CORS_request(both_clients):
     response = both_clients.get("/info", headers={"Origin": "http://example.org"})
-    assert (
-        ("access-control-allow-origin", "*") in tuple(response.headers.items())
-    ), f"Access-Control-Allow-Origin header not found in response headers: {response.headers}"
+    assert ("access-control-allow-origin", "*") in tuple(response.headers.items()), (
+        f"Access-Control-Allow-Origin header not found in response headers: {response.headers}"
+    )
 
 
 def test_preflight_CORS_request(both_clients):
@@ -18,6 +18,6 @@ def test_preflight_CORS_request(both_clients):
         "Access-Control-Allow-Origin",
         "Access-Control-Allow-Methods",
     ):
-        assert response_header.lower() in list(
-            response.headers.keys()
-        ), f"{response_header} header not found in response headers: {response.headers}"
+        assert response_header.lower() in list(response.headers.keys()), (
+            f"{response_header} header not found in response headers: {response.headers}"
+        )

tests/server/test_client.py

@@ -471,7 +471,7 @@ def write_to_file(_: str, results: dict):
         with open(tmp_path / "formulae.csv", "a") as f:
             for structure in results["data"]:
                 f.write(
-                    f'\n{structure["id"]}, {structure["attributes"]["chemical_formula_reduced"]}'
+                    f"\n{structure['id']}, {structure['attributes']['chemical_formula_reduced']}"
                 )
 
         return None
@@ -538,9 +538,9 @@ def test_binary_search_internals(trial_counts):
         window, probe = cli._update_probe_and_window(window, probe, below=below)
         # print(trial_counts, window, probe)
         if window[0] == window[1] == probe:
-            assert (
-                window[0] == trial_counts
-            ), "Binary search did not converge to the correct value."
+            assert window[0] == trial_counts, (
+                "Binary search did not converge to the correct value."
+            )
             break
         attempts += 1
     else:

tests/server/test_config.py

@@ -92,9 +92,9 @@ def test_debug_is_respected_when_off(both_clients: "OptimadeTestClient") -> None
             CONFIG.debug = False
 
         response = both_clients.get("/non/existent/path")
-        assert (
-            response.status_code == 404
-        ), f"Request should have failed, but didn't: {response.json()}"
+        assert response.status_code == 404, (
+            f"Request should have failed, but didn't: {response.json()}"
+        )
 
         response = response.json()
         assert "data" not in response
@@ -118,9 +118,9 @@ def test_debug_is_respected_when_on(both_clients: "OptimadeTestClient") -> None:
         CONFIG.debug = True
 
         response = both_clients.get("/non/existent/path")
-        assert (
-            response.status_code == 404
-        ), f"Request should have failed, but didn't: {response.json()}"
+        assert response.status_code == 404, (
+            f"Request should have failed, but didn't: {response.json()}"
+        )
 
         response = response.json()
         assert "data" not in response
@@ -174,13 +174,13 @@ def test_yaml_config_file() -> None:
             os.environ["OPTIMADE_CONFIG_FILE"] = str(Path(config_file.name).resolve())
             CONFIG = ServerConfig()
 
-        assert CONFIG.aliases == {
-            "references": {"last_modified": "mtime"}
-        }, f"Config: {CONFIG.aliases}"
+        assert CONFIG.aliases == {"references": {"last_modified": "mtime"}}, (
+            f"Config: {CONFIG.aliases}"
+        )
         assert CONFIG.debug, f"Config: {CONFIG.debug}"
-        assert CONFIG.provider_fields == {
-            "references": ["great_paper"]
-        }, f"Config: {CONFIG.provider_fields}"
+        assert CONFIG.provider_fields == {"references": ["great_paper"]}, (
+            f"Config: {CONFIG.provider_fields}"
+        )
 
         with tempfile.NamedTemporaryFile("w+t", suffix=".yml") as config_file:
             config_file.write(yaml_content + extra_yaml_content)

tests/server/utils.py

@@ -97,9 +97,9 @@ class BaseEndpointTests:
     @staticmethod
     def check_keys(keys: list, response_subset: "Iterable[str]"):
         for key in keys:
-            assert (
-                key in response_subset
-            ), f"{key!r} missing from response {response_subset}"
+            assert key in response_subset, (
+                f"{key!r} missing from response {response_subset}"
+            )
 
     def test_response_okay(self):
         """Make sure the response was successful"""
@@ -251,9 +251,9 @@ def get_response(self, both_clients):
 
     def test_response_okay(self):
         """Make sure the response was successful"""
-        assert (
-            self.response.status_code == 200
-        ), f"Request to {self.request_str} failed: {self.response.content}"
+        assert self.response.status_code == 200, (
+            f"Request to {self.request_str} failed: {self.response.content}"
+        )
 
 
 class HttpxTestClient(httpx.Client):

tests/test_setup.py

@@ -37,6 +37,6 @@ def test_distribution_package_data(package_file: str, build_dist: str) -> None:
     """Make sure a distribution has all the needed package data."""
     import re
 
-    assert re.findall(
-        package_file, build_dist
-    ), f"{package_file} file NOT found.\nOUTPUT:\n{build_dist}"
+    assert re.findall(package_file, build_dist), (
+        f"{package_file} file NOT found.\nOUTPUT:\n{build_dist}"
+    )