Adjusted to recognized masked nucleotides

Addresses issue #4.
MikeTrizna · Dec 27, 2019 · 5d714a5 · 5d714a5
1 parent 6d50fd6
commit 5d714a5
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/assembly_stats/__init__.py b/assembly_stats/__init__.py
@@ -1,5 +1,5 @@
 __author__ = 'Mike Trizna'
 __email__ = '[email protected]'
-__version__ = '0.1.3'
+__version__ = '0.1.4'
 
 from .assembly_stats import *
diff --git a/assembly_stats/assembly_stats.py b/assembly_stats/assembly_stats.py
@@ -29,7 +29,7 @@ def fasta_iter(fasta_file):
         # drop the ">"
         header = next(header)[1:].strip()
         # join all sequence lines to one.
-        seq = "".join(s.strip() for s in next(fa_iter))
+        seq = "".join(s.upper().strip() for s in next(fa_iter))
         yield header, seq
 
 

diff --git a/setup.py b/setup.py
@@ -9,7 +9,7 @@
 
 setuptools.setup(
     name="assembly_stats",
-    version="0.1.3",
+    version="0.1.4",
     author="Mike Trizna",
     author_email="[email protected]",
     description="Calculates both scaffold and contig statistics (N50, L50, etc.) from a scaffold FASTA file.",