Add back dashboard (also the user login)

.travis.yml

@@ -21,6 +21,7 @@ matrix:
 
 # command to install dependencies
 install:
+  - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then sudo apt-get install enchant; fi
   - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew update; fi
   - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew install rabbitmq; fi
   - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew install memcached; fi
@@ -52,8 +53,9 @@ before_script:
   - sudo chmod 666 /var/log/django/django.log
   - sudo touch /var/log/django/i5k.log
   - sudo chmod 666 /var/log/django/i5k.log
-  - sudo python2 manage.py migrate
   - sudo python2 setup.py
+  - sudo python2 manage.py migrate
+  - sudo python2 manage.py collectstatic --noinput
 
 # command to run tests
 script:

blast/admin.py

@@ -136,3 +136,12 @@ def get_model_perms(self, request):
 
 
 admin.site.register(JbrowseSetting, JbrowseSettingAdmin)
+
+class BlastSearchAdmin(admin.ModelAdmin):
+    list_display = ('task_id', 'sequence',)
+    search_fields = ('task_id', 'sequence',)
+    actions_on_top = True
+    actions_on_bottom = True
+admin.site.register(BlastSearch, BlastSearchAdmin)
+
+

blast/migrations/0007_auto_20180104_1513.py

@@ -0,0 +1,52 @@
+# -*- coding: utf-8 -*-
+from __future__ import unicode_literals
+
+from django.db import migrations, models
+from django.conf import settings
+import filebrowser.fields
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        migrations.swappable_dependency(settings.AUTH_USER_MODEL),
+        ('blast', '0006_auto_20150410_1038'),
+    ]
+
+    operations = [
+        migrations.CreateModel(
+            name='BlastSearch',
+            fields=[
+                ('id', models.AutoField(verbose_name='ID', serialize=False, auto_created=True, primary_key=True)),
+                ('task_id', models.CharField(max_length=50, null=True)),
+                ('search_tag', models.CharField(max_length=64)),
+                ('enqueue_date', models.DateTimeField()),
+                ('sequence', models.TextField(null=True)),
+                ('program', models.CharField(max_length=32)),
+                ('soft_masking', models.BooleanField()),
+                ('low_complexity', models.BooleanField()),
+                ('penalty', models.IntegerField()),
+                ('evalue', models.DecimalField(max_digits=10, decimal_places=5)),
+                ('gapopen', models.IntegerField()),
+                ('strand', models.CharField(max_length=10)),
+                ('gapextend', models.IntegerField()),
+                ('word_size', models.IntegerField()),
+                ('reward', models.IntegerField()),
+                ('max_target_seqs', models.IntegerField()),
+                ('organisms', models.TextField(null=True)),
+                ('matrix', models.CharField(max_length=10, null=True)),
+                ('threshold', models.IntegerField(null=True)),
+                ('user', models.ForeignKey(blank=True, to=settings.AUTH_USER_MODEL, null=True)),
+            ],
+        ),
+        migrations.AlterField(
+            model_name='blastdb',
+            name='fasta_file',
+            field=filebrowser.fields.FileBrowseField(max_length=200, verbose_name=b'FASTA file path'),
+        ),
+        migrations.AlterField(
+            model_name='blastdb',
+            name='organism',
+            field=models.ForeignKey(to='app.Organism'),
+        ),
+    ]

blast/migrations/0008_merge_20180511_1254.py

@@ -0,0 +1,16 @@
+# -*- coding: utf-8 -*-
+# Generated by Django 1.11.11 on 2018-05-11 16:54
+from __future__ import unicode_literals
+
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ('blast', '0007_auto_20180104_1513'),
+        ('blast', '0007_auto_20180104_1450'),
+    ]
+
+    operations = [
+    ]

blast/models.py

@@ -218,3 +218,31 @@ class JbrowseSetting(models.Model):
 
     def __unicode__(self):
         return self.url
+
+class BlastSearch(models.Model):
+    task_id         = models.CharField(null=True, max_length=50)
+    search_tag      = models.CharField(max_length=64)
+    enqueue_date    = models.DateTimeField()
+    sequence        = models.TextField(null=True)
+    program         = models.CharField(max_length=32)
+    user            = models.ForeignKey(User, null=True, blank=True)
+    soft_masking    = models.BooleanField()
+    low_complexity  = models.BooleanField()
+    penalty         = models.IntegerField()
+    #tr_box          = models.BooleanField(default=False)
+    #ga_box          = models.BooleanField(default=False)
+    #pep_box         = models.BooleanField(default=False)
+    evalue          = models.DecimalField(max_digits=10, decimal_places=5)
+    gapopen         = models.IntegerField()
+    strand          = models.CharField(max_length=10)
+    gapextend       = models.IntegerField()
+    word_size       = models.IntegerField()
+    reward          = models.IntegerField()
+    max_target_seqs = models.IntegerField()
+    organisms       = models.TextField(null=True)
+    matrix          = models.CharField(max_length=10, null=True)
+    threshold       = models.IntegerField(null=True)
+
+    def __unicode__(self):
+        return self.search_tag
+