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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.
README.md

About

A distributed national bioinformatics infrastructure supporting life sciences in Sweden

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 239 80

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 15

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    18 9

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 218 107

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 207 47

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 10

Repositories

Showing 10 of 310 repositories
  • PLP_Design_Portal Public

    This repository contains a package to create padlock probes that target RNA directly and for developing a user-friendly.portal

    NBISweden/PLP_Design_Portal’s past year of commit activity
    0 0 11 1 Updated Feb 19, 2025
  • assembly-project-template Public template

    This is a template for all assembly projects. Please read the instructions below on how to use it.

    NBISweden/assembly-project-template’s past year of commit activity
    Shell 3 MIT 2 4 3 Updated Feb 19, 2025
  • Earth-Biogenome-Project-pilot Public

    Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.

    NBISweden/Earth-Biogenome-Project-pilot’s past year of commit activity
    Nextflow 12 GPL-3.0 8 62 2 Updated Feb 19, 2025
  • teaching_literature_club Public

    NBIS' teaching literature club

    NBISweden/teaching_literature_club’s past year of commit activity
    Shell 0 GPL-3.0 1 0 0 Updated Feb 19, 2025
  • elixir_evaluation_evaluation Public

    An evaluation of the ELIXIR course evaluation

    NBISweden/elixir_evaluation_evaluation’s past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Feb 19, 2025
  • .github Public
    NBISweden/.github’s past year of commit activity
    0 0 0 0 Updated Feb 19, 2025
  • workshop-epigenomics-RTDs Public

    workshop website on readthedocs

    NBISweden/workshop-epigenomics-RTDs’s past year of commit activity
    19 14 0 0 Updated Feb 19, 2025
  • sda-cli Public

    User command line interface for the SDA

    NBISweden/sda-cli’s past year of commit activity
    Go 5 AGPL-3.0 1 51 2 Updated Feb 18, 2025
  • sda-services-backup Public
    NBISweden/sda-services-backup’s past year of commit activity
    Go 2 1 1 0 Updated Feb 18, 2025
  • fungal-trans Public

    A Snakemake workflow for fungal metatranscriptomics

    NBISweden/fungal-trans’s past year of commit activity
    Python 4 MIT 4 1 0 Updated Feb 18, 2025
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