…ll and cmake include files for the static API

…ing variable against standard names

…sh out argument parsing routine more

…ree for that Suite:

in other words, a list of schemes in the order that they are called, including duplicates
and subcycle loops

…h metadata files

…concept later)

…etadata converted properly (?)

… of schemes for a given SDF, and a dictionary that associates those schemes with their corresponding .meta files. Last step is to simply parse those .meta files for their variables!

…tadataTable objects for each scheme's .meta file; these objects can then be parsed to get all the information we need for the final step!

…subroutine name, and intent. If partial match, output list of partial matches

…le, variable name, and directory with metadata files, and outputs a list of schemes that use the given variable, along with their intent. Will convert into a more "graph-like" output later, along with other cleanup that is needed before review/testing by the group.

…ive a graphical representation of the calling tree

Also some more cleanup:
 - Change default logging level to WARNING to get rid of unnecessary log messages (debug level remains unchanged)
 - Change more strings to f strings
 - Remove more leftover debug printouts
 - Raise exception if create_metadata_filename_dict fails (esp for no .meta files found)
 - Remove check_var function (might re-introduce in the future)

…ve duplicate calls

…build scripts, correct unit for ccpp_constant_one in ccpp_prebuild scripts

… into ccpp_error_code_in_prebuild

ccpp_prebuild: Update CCPP metadata for error flag variable and constant one

…pp-framework into HEAD

…f required variables

…pp_framework_stub_merged_20220202

… ccpp_prebuild.py

…es_through_suite

…ctures from capgen

…ppropriate locations

… and intent(inout)

…from add_argument calls

… remove re-assignment of arguments and just manage them with "args" object

…" function from ccpp_prebuild

… __init__

Fix metadata2html.py, add some more documentation to ccpp_prebuild.py

…hod of Suite class with an optional argument to avoid duplicating existing code while not affecting existing calls to parse method.

…o html

…rite routines

…limbfuji/ccpp-framework into feature/remove_ccpp_api

…ub.com/climbfuji/ccpp-framework into feature/remove_ccpp_api

Remove legacy src/ccpp_api.F90 - contains #445 (fix metadata2html.py) and #447 (remove NEMSfv3gfs test scripts)

…d mode

Remove custom "BitForBit" (aka REPRO) mode

…pp_framework_stub_merged_20220202

…es_through_suite

…h_suite

Add initial version of ccpp_track_variables.py

…es based on the xml file,

output a list of schemes broken down by group (since groups can be called in different orders
based on the logic in the host model)

…ation for multiple schemes, which led to incorrect duplication of schemes listed in output

…interface variables with explicit lower bounds

…variables and use explicit lower bounds in variable definitions for interface variables

…ature/iap_dom

Bug fix and improvement for ccpp_track_variables tool

Update README links for v6

…20202

ccpp_prebuild: ccpp stub and various bugfixes

Update README links for v6

…ature/iap_dom

Update ccpp_prebuild to support IAP model

Limit suite names to 37 characters or less

…work with Python 3.11: global inline flags in the middle of regular expressions are deprecated since Python 3.6, and no longer supported in Python 3.11

Fix ccpp-framework errors with Python 3.11

* Fix error message for unit conversions involving unit "1"

* Add unit tests for function string_to_python_identifier()

This PR is a demo to begin adding more unit test coverage to the CCPP-framework. Since a unit test was recently added for the test_string_to_python_identifier function in common.py, I added unit tests for the remaining functions in that file.

To run these unit tests, simply navigate to the test/unit_tests directory and run the script (with Python 3.7 or higher):

$ python test_common.py 
.....
----------------------------------------------------------------------
Ran 5 tests in 0.023s

OK

Co-authored-by: goldy <[email protected]>

In order to have an ensemble of model instances in a JEDI executable, we
need for packages the model relies on to be “stateless” – meaning
that the data for an instances are not shared between instances. A more
comprehensive solution would be to implement physics so that all such
data is either passed in via arguments to the package, or allocated as
an instance of a class defining the physics.

Deferring the larger issue of revisiting CCPP requirements to cover
support for concurrent instances, this PR takes a more modest approach. It
adds a new "instance" dimension to the types already defined for GFS
physics (GFS_control, GFS_data, GFS_interstitial). And it includes some
changes that were needed to address first-time initialization latches
inside certain packages.

One of these, in Thompson MP, declears the heap allocated fields by ccpp
instance. The issue here was that only the first instance of Thompson
MP was initializing itself. The other guards against trying to allocate
data that has already been allocated (e.g. h2ointerp and ozinterp).

The extent of packages touched by the PR is only one NRL-used suite that
is a subset of all the packages in CCPP.

…e information from host model

…rrect path to TEST_FILE

…name_and_update_stub

(main) ccpp_prebuild: fix hardcoded name of ccpp_t host variable, update CCPP stub, fix capgen unit tests