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@NCBI-Hackathons

NCBI-Hackathons (Archive)

Archived repositories from past NCBI-Hackathons (now NCBI Codeathons), for recent content see: https://github.com/NCBI-Codeathons

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  1. EDirectCookbook EDirectCookbook Public

    159 53

  2. TheHumanPangenome TheHumanPangenome Public

    A Strategy for Building and Using a Human Reference Pangenome

    Jupyter Notebook 70 24

  3. Community_Software_Tools_for_NGS Community_Software_Tools_for_NGS Public

    61 26

  4. NovoGraph NovoGraph Public

    NovoGraph: building whole genome graphs from long-read-based de novo assemblies

    Perl 45 8

  5. rnaseqview rnaseqview Public

    RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon

    JavaScript 36 17

  6. ConsensusML ConsensusML Public

    Machine Learning to Detect Cancer Biomarkers from RNAseq Data

    HTML 33 24

Repositories

Showing 10 of 257 repositories
  • deSRA Public

    An automated protocol to extract variation or expression from public NGS datasets

    NCBI-Hackathons/deSRA’s past year of commit activity
    JavaScript 9 MIT 7 1 1 Updated Mar 28, 2024
  • LabPype Public

    Framework for Creating Pipeline Software

    NCBI-Hackathons/LabPype’s past year of commit activity
    Python 21 4 3 0 Updated Nov 15, 2023
  • Semantic-search-log-analysis-pipeline Public

    Classify web visitor queries so you can chart, and respond to, trends in information seeking

    NCBI-Hackathons/Semantic-search-log-analysis-pipeline’s past year of commit activity
    JavaScript 14 MIT 3 1 0 Updated Sep 7, 2023
  • MutPredMerge Public

    Consolidation of tools in the MutPred Suite to work with VCF files

    NCBI-Hackathons/MutPredMerge’s past year of commit activity
    Python 5 MIT 2 3 0 Updated Jul 19, 2023
  • deVoReaNN Public

    A virtual reality environment for physically assembling deep learning models to solve data science problems.

    NCBI-Hackathons/deVoReaNN’s past year of commit activity
    C# 12 MIT 2 0 4 Updated Jul 6, 2023
  • Phenogeno_Viz Public
    NCBI-Hackathons/Phenogeno_Viz’s past year of commit activity
    Ruby 1 MIT 0 0 10 Updated Jan 19, 2023
  • The-Broad-Institute-Single-Cell-RNA-Seq-Data-Set Public

    Visualize cancer genomes with FAIR single-cell RNA-seq data

    NCBI-Hackathons/The-Broad-Institute-Single-Cell-RNA-Seq-Data-Set’s past year of commit activity
    Python 11 MIT 6 5 18 Updated Jan 5, 2023
  • FAIRy-COMPASS Public

    FAIRness assessment for NCBI Hackathon products

    NCBI-Hackathons/FAIRy-COMPASS’s past year of commit activity
    Python 4 MIT 0 0 4 Updated Jan 3, 2023
  • iMETRIC Public

    Automated combinatorial epitope analysis from TCR clones

    NCBI-Hackathons/iMETRIC’s past year of commit activity
    Python 2 Apache-2.0 1 0 11 Updated Dec 26, 2022
  • TriFECTA Public

    The goal of this project is use natural language processing to extract exclusion and inclusion criteria from free form text fields to match patients with clinical trials.

    NCBI-Hackathons/TriFECTA’s past year of commit activity
    Shell 5 MIT 3 0 2 Updated Dec 8, 2022
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