Merge pull request #21 from fmalatino/update/workflow

Addition of `coverage` tool to unit tests in workflow
NOAA-GFDL · Jul 12, 2024 · 595c3c8 · 595c3c8
2 parents 838e92c + c8e244a
commit 595c3c8
Show file tree

Hide file tree

Showing 2 changed files with 21 additions and 21 deletions.
diff --git a/.github/workflows/translate.yaml b/.github/workflows/translate.yaml
@@ -62,32 +62,32 @@ jobs:
       - name: NumPy FvTp2d
         run: |
           cd ${GITHUB_WORKSPACE}/pyFV3
-          pytest \
-            -v -s --data_path=./test_data/8.1.3/c12_6ranks_standard/dycore \
-            --backend=numpy \
-            --which_modules=FvTp2d \
-            --threshold_overrides_file=./tests/savepoint/translate/overrides/standard.yaml \
-            ./tests/savepoint
+          coverage run --rcfile=setup.cfg -m pytest \
+              -v -s --data_path=./test_data/8.1.3/c12_6ranks_standard/dycore \
+              --backend=numpy \
+              --which_modules=FvTp2d \
+              --threshold_overrides_file=./tests/savepoint/translate/overrides/standard.yaml \
+              ./tests/savepoint
 
       - name: Numpy D_SW
         run: |
          cd ${GITHUB_WORKSPACE}/pyFV3
-         pytest \
-            -v -s --data_path=./test_data/8.1.3/c12_6ranks_standard/dycore \
-            --backend=numpy \
-            --which_modules=D_SW \
-            --threshold_overrides_file=./tests/savepoint/translate/overrides/standard.yaml \
-            ./tests/savepoint
+         coverage run --rcfile=setup.cfg -m pytest \
+              -v -s --data_path=./test_data/8.1.3/c12_6ranks_standard/dycore \
+              --backend=numpy \
+              --which_modules=D_SW \
+              --threshold_overrides_file=./tests/savepoint/translate/overrides/standard.yaml \
+              ./tests/savepoint
 
       - name: Numpy Remapping
         run: |
           cd ${GITHUB_WORKSPACE}/pyFV3
-          pytest \
-            -v -s --data_path=./test_data/8.1.3/c12_6ranks_standard/dycore \
-            --backend=numpy \
-            --which_modules=Remapping \
-            --threshold_overrides_file=./tests/savepoint/translate/overrides/standard.yaml \
-            ./tests/savepoint
+          coverage run --rcfile=setup.cfg -m pytest \
+              -v -s --data_path=./test_data/8.1.3/c12_6ranks_standard/dycore \
+              --backend=numpy \
+              --which_modules=Remapping \
+              --threshold_overrides_file=./tests/savepoint/translate/overrides/standard.yaml \
+              ./tests/savepoint
 
       - name: Orchestrated dace-cpu Acoustics
         run: |
@@ -97,7 +97,7 @@ jobs:
           export PACE_TEST_N_THRESHOLD_SAMPLES=0
           export OMP_NUM_THREADS=1
           export PACE_LOGLEVEL=Debug
-          mpiexec -mca orte_abort_on_non_zero_status 1 -np 6 --oversubscribe pytest \
+          mpiexec -mca orte_abort_on_non_zero_status 1 -np 6 --oversubscribe coverage run --rcfile=setup.cfg -m mpi4py -m pytest \
             -v -s --data_path=./test_data/8.1.3/c12_6ranks_standard/dycore \
             --backend=dace:cpu \
             -m parallel \

diff --git a/setup.py b/setup.py
@@ -27,8 +27,8 @@
 
 setup(
     author="The Allen Institute for Artificial Intelligence",
-    author_email="[email protected]",
-    python_requires=">=3.8",
+    author_email="[email protected]",
+    python_requires=">=3.11",
     classifiers=[
         "Development Status :: 2 - Pre-Alpha",
         "Intended Audience :: Developers",