This repo serves as an alternative version to the original Seq-n-Slide pipeline, with code modified to work with Mount Sinai's Minerva (LSF based) HPC system.
LINKs for the orignal repo below:
Github Link:(https://github.com/igordot/sns/tree/main)
Automated workflows for common sequencing-based (Illumina) protocols, such as RNA-seq, ChIP-seq, ATAC-seq, WGBS/RRBS methylation, whole genome/exome/targeted variant detection, and contaminant screening.
For more information, see the full documentation at https://igordot.github.io/sns (*The commands from the original version will remain unchanged)