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fix referenced morphs/biophysics: load from included files, add tests, add some error checking #432

fix referenced morphs/biophysics: load from included files, add tests, add some error checking

fix referenced morphs/biophysics: load from included files, add tests, add some error checking #432

Workflow file for this run

name: Build
on:
push:
branches: [ master, development, experimental ]
pull_request:
branches: [ master, development, experimental ]
jobs:
build:
name: Check Python ${{ matrix.python-version }} on ${{ matrix.runs-on }}
runs-on: ${{ matrix.runs-on }}
strategy:
fail-fast: false
matrix:
python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
runs-on: [ubuntu-latest, windows-latest, macos-latest]
exclude:
- runs-on: macos-latest
python-version: "3.8"
- runs-on: macos-latest
python-version: "3.9"
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
#sudo apt-get install libhdf5-serial-dev liblzo2-dev libgraphviz-dev -y
python -m pip install --upgrade pip
- name: Install HDF5 for pytables on macos-latest
if: ${{ matrix.runs-on == 'macos-latest' }}
run: |
brew install hdf5
- name: Build package
run: |
pip install .[full]
- name: Test with pytest
if: ${{ matrix.runs-on == 'ubuntu-latest' }}
run: |
# Just test on linux for now...
pytest -vs
- name: Run examples
run: |
cd neuroml/examples
python run_all.py
- name: Final version info
run: |
pip list
- name: Lint with flake8
if: ${{ matrix.runs-on == 'ubuntu-latest' }}
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics