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Write to Zarr store using h5py-like interface #28

Merged
merged 42 commits into from
Apr 4, 2024
Merged

Write to Zarr store using h5py-like interface #28

merged 42 commits into from
Apr 4, 2024

Commits on Mar 21, 2024

  1. implementing write zarr

    @magland
    magland committed Mar 21, 2024
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Commits on Mar 22, 2024

  1. add conversion/

    @magland
    magland committed Mar 22, 2024
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  2. create attr_conversion.py and dataset_conversion.py

    @magland
    magland committed Mar 22, 2024
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  3. implementing zarr write

    @magland
    magland committed Mar 22, 2024
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Commits on Mar 25, 2024

  1. implement write zarr

    @magland
    magland committed Mar 25, 2024
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  2. zarr write tests

    @magland
    magland committed Mar 25, 2024
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  3. add example_create_zarr_nwb.py

    @magland
    magland committed Mar 25, 2024
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  4. fix tests

    @magland
    magland committed Mar 25, 2024
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Commits on Mar 26, 2024

  1. remove debug line

    @magland
    magland committed Mar 26, 2024
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  2. allow bytes for h5 attr

    @magland
    magland committed Mar 26, 2024
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  3. fix encode_nan_inf_ninf

    @magland
    magland committed Mar 26, 2024
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  4. support fletcher32 filter

    @magland
    magland committed Mar 26, 2024
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  5. avoid divide by zero when shape is 0

    @magland
    magland committed Mar 26, 2024
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  6. handle numpy array of bytes in attr

    @magland
    magland committed Mar 26, 2024
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  7. Support arrays with dtype of kind 'S'

    @magland
    magland committed Mar 26, 2024
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Commits on Mar 27, 2024

  1. handle case where shape size is zero

    @magland
    magland committed Mar 27, 2024
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  2. edit nwb example

    @magland
    magland committed Mar 27, 2024
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Commits on Mar 28, 2024

  1. file modes, update docstrings

    @magland
    magland committed Mar 28, 2024
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  2. Merge branch 'main' into write

    @magland
    magland committed Mar 28, 2024
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Commits on Mar 29, 2024

  1. implement .copy() and respect refs

    @magland
    magland committed Mar 29, 2024
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  2. fix __delitem__()

    @magland
    magland committed Mar 29, 2024
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Commits on Apr 2, 2024

  1. Update tests/test_fletcher32.py 

    Co-authored-by: Ryan Ly <[email protected]>
    @magland @rly
    magland and rly authored Apr 2, 2024
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  2. Update tests/test_remote_data.py 

    Co-authored-by: Ryan Ly <[email protected]>
    @magland @rly
    magland and rly authored Apr 2, 2024
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  3. Update tests/test_zarr_write.py 

    Co-authored-by: Ryan Ly <[email protected]>
    @magland @rly
    magland and rly authored Apr 2, 2024
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  4. define fletcher32 on datasets

    @magland
    magland committed Apr 2, 2024
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Commits on Apr 4, 2024

  1. Update lindi/LindiH5pyFile/LindiH5pyFile.py

    @rly
    rly authored Apr 4, 2024
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  2. Update lindi/LindiH5pyFile/LindiH5pyFile.py

    @rly
    rly authored Apr 4, 2024
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  3. Update lindi/LindiH5pyFile/LindiH5pyFile.py

    @rly
    rly authored Apr 4, 2024
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  4. rearrange/rename writer objects

    @magland
    magland committed Apr 4, 2024
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  5. add comment 

    Co-authored-by: Ryan Ly <[email protected]>
    @magland @rly
    magland and rly authored Apr 4, 2024
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  6. update comment. 

    Co-authored-by: Ryan Ly <[email protected]>
    @magland @rly
    magland and rly authored Apr 4, 2024
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  7. Update lindi/LindiH5pyFile/LindiH5pyGroup.py 

    Co-authored-by: Ryan Ly <[email protected]>
    @magland @rly
    magland and rly authored Apr 4, 2024
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  8. remove np.float128

    @magland
    magland committed Apr 4, 2024
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  9. Merge branch 'write' of https://github.com/NeurodataWithoutBorders/lindi 

     into write
    @magland
    magland committed Apr 4, 2024
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  10. simplify h5_ref_to_zarr_attr

    @magland
    magland committed Apr 4, 2024
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  11. create tests/utils.py

    @magland
    magland committed Apr 4, 2024
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  12. simplify test_copy

    @magland
    magland committed Apr 4, 2024
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  13. fix open mode in examples

    @magland
    magland committed Apr 4, 2024
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  14. fix typing checking 

    Co-authored-by: Ryan Ly <[email protected]>
    @magland @rly
    magland and rly authored Apr 4, 2024
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  15. implement require_dataset()

    @magland
    magland committed Apr 4, 2024
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  16. float type checking

    @magland
    magland committed Apr 4, 2024
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  17. complex type check

    @magland
    magland committed Apr 4, 2024
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