OMOP-2-OPMI
OMOP-2-OPMI is an ontological representation of the OMOP CDM elements and the relations among these elements. Its development supports ontology-based OMOP data standardization, integration, and advanced analysis.
The project started when we were devleoping our OPMI ontology and its usages. Mr. Long Tran has joined the OMOP-2-OPMI development since 2021.
OMOP-2-OPMI has also been used for different applications.
- Long Nguyen Minh Tran, University of Michigan
- Saketh Sairam Boddapati, University of Michigan
- Minh-Y Nguyen, University of Michigan
- Oliver He, University of Michigan
He Y, Ong E, Schaub J, Dowd F, O’Toole JF, Siapos A, Reich C, Seager S, Wan L, Yu H, Zheng J, Stoeckert C, Yang X, Yang S, Steck B, Park C, Barisoni L, Kretzler M, Himmelfarb J, Iyengar R, Mooney SD, for the Kidney Precision Medicine Project Consortium. OPMI: the Ontology of Precision Medicine and Investigation and its support for clinical data and metadata representation and analysis. The 10th International Conference on Biomedical Ontology (ICBO-2019), July 30 - August 2, 2019, Buffalo, NY, USA. 10-page full length article. Paper URL: http://ceur-ws.org/Vol-2931/ICBO_2019_paper_34.pdf.
Long Tran, Yongqun He. OMOP-2-OPMI: Ontologization of OMOP CDM using OPMI to support clinical data interoperability and analysis. ICBO-2022. Manuscript PDF: https://icbo-conference.github.io/icbo2022/papers/ICBO-2022_paper_1549.pdf . Slides: https://icbo-conference.github.io/icbo2022/slides/Long_ICBO2022_OMOP-2-OPMI.pdf .