supplementing manual build system

CMake/FindLibConfig.cmake

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+# Find the CUnit includes and library
+#
+# This module defines
+# LIBCONFIG_INCLUDE_DIR, where to find cppunit include files, etc.
+# LIBCONFIG_LIBRARIES, the libraries to link against to use CppUnit.
+# LIBCONFIG_STATIC_LIBRARIY_PATH
+# LIBCONFIG_FOUND, If false, do not try to use CppUnit.
+
+# also defined, but not for general use are
+# LIBCONFIG_LIBRARY, where to find the CUnit library.
+
+#MESSAGE("Searching for libconfig library")
+
+FIND_PATH(LIBCONFIG_INCLUDE_DIR libconfig.h
+        /usr/local/include
+        /usr/include
+        )
+
+FIND_PATH(LIBCONFIGPP_INCLUDE_DIR libconfig.h++
+        /usr/local/include
+        /usr/include
+        )
+
+FIND_LIBRARY(LIBCONFIG_LIBRARY config
+        /usr/local/lib
+        /usr/lib
+        )
+
+FIND_LIBRARY(LIBCONFIGPP_LIBRARY config++
+        /usr/local/lib
+        /usr/lib
+        )
+
+FIND_LIBRARY(LIBCONFIG_STATIC_LIBRARY "libconfig${CMAKE_STATIC_LIBRARY_SUFFIX}"
+        /usr/local/lib
+        /usr/lib
+        )
+
+FIND_LIBRARY(LIBCONFIGPP_STATIC_LIBRARY "libconfig++${CMAKE_STATIC_LIBRARY_SUFFIX}"
+        /usr/local/lib
+        /usr/lib
+        )
+
+
+IF (LIBCONFIG_INCLUDE_DIR)
+    IF (LIBCONFIG_LIBRARY)
+        SET(LIBCONFIG_FOUND TRUE)
+        SET(LIBCONFIG_LIBRARIES ${LIBCONFIG_LIBRARY})
+        SET(LIBCONFIG_STATIC_LIBRARY_PATH ${LIBCONFIG_STATIC_LIBRARY})
+    ENDIF (LIBCONFIG_LIBRARY)
+ENDIF (LIBCONFIG_INCLUDE_DIR)
+
+IF (LIBCONFIGPP_INCLUDE_DIR)
+    IF (LIBCONFIGPP_LIBRARY)
+        SET(LIBCONFIGPP_FOUND TRUE)
+        SET(LIBCONFIGPP_LIBRARIES ${LIBCONFIGPP_LIBRARY})
+        SET(LIBCONFIGPP_STATIC_LIBRARY_PATH ${LIBCONFIGPP_STATIC_LIBRARY})
+    ENDIF (LIBCONFIGPP_LIBRARY)
+ENDIF (LIBCONFIGPP_INCLUDE_DIR)
+
+IF (LIBCONFIG_FOUND)
+    IF (NOT LibConfig_FIND_QUIETLY)
+        MESSAGE(STATUS "Found LibConfig++: ${LIBCONFIGPP_LIBRARIES}")
+        MESSAGE(STATUS "Found LibConfig: ${LIBCONFIG_LIBRARIES}")
+        MESSAGE(STATUS "static LibConfig path: ${LIBCONFIG_STATIC_LIBRARY_PATH}")
+    ENDIF (NOT LibConfig_FIND_QUIETLY)
+ELSE (LIBCONFIG_FOUND)
+    IF (LibConfig_FIND_REQUIRED)
+        MESSAGE(SEND_ERROR "Could NOT find LibConfig")
+    ENDIF (LibConfig_FIND_REQUIRED)
+ENDIF (LIBCONFIG_FOUND)
+
+MARK_AS_ADVANCED(LIBCONFIG_INCLUDE_DIR LIBCONFIG_LIBRARIES)

build/clean.sh

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+rm CMakeCache.txt
+rm -r CMakeFiles

build/make_gitr.sh

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+#!/bin/bash
+source ../env.default.sh
+
+cmake -DTHRUST_INCLUDE_DIR=$THRUST_DIR \
+  -DNETCDF_CXX_INCLUDE_DIR=$NETCDFCXX4INCLUDE \
+  -DNETCDF_CXX_LIBRARY=$NETCDFCXX4LIB \
+  -DLIBCONFIG_INCLUDE_DIR=$LIBCONFIG_INCLUDE_DIR \
+  -DLIBCONFIGPP_LIBRARY=$LIBCONFIGLIB \
+  -DLIBCONFIGPP_INCLUDE_DIR=$LIBCONFIG_INCLUDE_DIR \
+  -DUSE_CUDA=1 \
+  -DUSE_MPI=0 \
+  -DUSE_DOUBLE=1 \
+    ..
+#    -DNETCDF_CXX_INCLUDE_DIR=$NETCDFCXX4INCLUDE \
+#    -DNETCDF_CXX_LIBRARY=$NETCDFLIB_CPP \
+#    -DNETCDF_DIR=$NETCDFDIR \
+#    -DNETCDF_INCLUDE_DIR=$NETCDFINCLUDE \
+#    -DNETCDF_LIBRARY=$NETCDFLIB \
+#    -DLIBCONFIGPP_LIBRARY=$LIBCONFIGLIB \
+#    -DLIBCONFIGPP_INCLUDE_DIR=$LIBCONFIG_INCLUDE_DIR \
+#    -DCPPFLAGS=-I${H5DIR}/include \
+#    -DLDFLAGS=${H5DIR}/lib/libhdf5.dylib \
+#    -DHDF5_LIBRARIES=${H5DIR}/lib/libhdf5.a \
+#    -DHDF5_INCLUDE_DIRS=${H5DIR}/include \
+#    -DHDF5_C_COMPILER_EXECUTABLE=${H5DIR}/bin/h5pcc \
+#    -DHDF5_HL_LIBRARIES=${H5DIR}/lib/libhdf5_hl.dylib \

dependencies/build_all_dependencies.sh

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+export GITR_TOP_LEVEL=~/trash
+./build_zlib.sh
+./build_m4.sh
+./build_hdf5.sh
+./build_necdfc.sh
+./build_necdfcxx.sh
+./build_libconfig.sh

dependencies/build_hdf5.sh

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+wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.2/src/hdf5-1.12.2.tar.gz
+tar -xzvf hdf5-1.12.2.tar.gz
+cd hdf5-1.12.2/
+mkdir ../hdf5build
+./configure --with-zlib=$GITR_TOP_LEVEL/zlibbuild --prefix=$GITR_TOP_LEVEL/hdf5build
+make -j
+#make check
+make install
+make check-install

dependencies/build_libconfig.sh

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+wget https://github.com/hyperrealm/libconfig/archive/v1.7.2.tar.gz
+tar -xvzf v1.7.2.tar.gz
+cd libconfig-1.7.2/
+mkdir ../libconfigbuild
+autoreconf
+./configure --prefix=$GITR_TOP_LEVEL/libconfigbuild
+make
+make check
+make install

dependencies/build_m4.sh

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+wget https://ftp.gnu.org/gnu/m4/m4-1.4.19.tar.gz
+tar -xzvf m4-1.4.19.tar.gz
+cd m4-1.4.19/
+mkdir ../m4build
+./configure --prefix=$GITR_TOP_LEVEL/m4build
+make
+make install

dependencies/build_necdfc.sh

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+wget https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.7.4.tar.gz
+tar -xzvf v4.7.4.tar.gz
+cd netcdf-c-4.7.4/
+mkdir ../netcdfcbuild
+export CPPFLAGS="-I$GITR_TOP_LEVEL/zlibbuild/include -I$GITR_TOP_LEVEL/hdf5build/include"
+export LDFLAGS="-L$GITR_TOP_LEVEL/zlibbuild/lib -L$GITR_TOP_LEVEL/hdf5build/lib"
+./configure --disable-dap --prefix=$GITR_TOP_LEVEL/netcdfcbuild
+make
+#make check
+make install

dependencies/build_necdfcxx.sh

@@ -0,0 +1,11 @@
+wget https://github.com/Unidata/netcdf-cxx4/archive/refs/tags/v4.3.1.tar.gz
+tar -xzvf v4.3.1.tar.gz
+cd netcdf-cxx4-4.3.1/
+mkdir ../netcdfcxxbuild
+export PATH=$PATH:/home/tqd/Code/netcdfcbuild/bin
+export LDFLAGS="-L$GITR_TOP_LEVEL/zlibbuild/lib -L$GITR_TOP_LEVEL/hdf5build/lib -L$GITR_TOP_LEVEL/netcdfcbuild/lib"
+export CPPFLAGS="-I$GITR_TOP_LEVEL/zlibbuild/include -I$GITR_TOP_LEVEL/hdf5build/include -I$GITR_TOP_LEVEL/netcdfcbuild/include"
+./configure --prefix=$GITR_TOP_LEVEL/netcdfcxxbuild
+make
+#make check
+make install

dependencies/build_zlib.sh

@@ -0,0 +1,7 @@
+wget http://zlib.net/zlib-1.2.13.tar.gz
+tar -xzvf zlib-1.2.13.tar.gz
+cd zlib-1.2.13
+mkdir ../zlibbuild
+./configure --prefix=$GITR_TOP_LEVEL/zlibbuild
+make
+make install

dependencies/clean_dependencies.sh

@@ -0,0 +1,18 @@
+rm -r zlib-1.2.13
+rm zlib-1.2.13.tar.gz
+rm -r zlibbuild
+rm hdf5-1.12.2.tar.gz
+rm -r hdf5-1.12.2
+rm -r hdf5build
+rm v4.7.4.tar.gz
+rm -r netcdf-c-4.7.4
+rm -r netcdfcbuild
+rm -r netcdfcxxbuild
+rm -r netcdf-cxx4-4.3.1
+rm v4.3.1.tar.gz
+rm m4-1.4.19.tar.gz
+rm -r m4-1.4.19
+rm -r m4build
+rm v1.7.2.tar.gz
+rm -r libconfig-1.7.2
+rm -r libconfigbuild

env.default.sh

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+export GITR_TOP_LEVEL=~/trash
+#export TQD_HOME=/home/tqd
+#export PATH=/home/tqd/Code/cmakebuild/bin:$PATH:$TQD_HOME/Code/pythonbuild/bin:$TQD_HOME/Code/openmpiBuild/bin:/home/tqd/Code/llvm-project/build/bin
+#export CMAKE_SOURCE_DIR=../
+#export  NETCDF=$TQD_HOME/Code/netcdfcbuild 
+export  NETCDFCXX4=$GITR_TOP_LEVEL/netcdfcxxbuild  
+#export  NETCDFDIR=$NETCDF/lib 
+#export  NETCDFCXX4DIR=$NETCDFCXX4/lib 
+#export  NETCDFINCLUDE=$NETCDF/include 
+export  NETCDFCXX4INCLUDE=$NETCDFCXX4/include 
+export  NETCDFCXX4LIB=$NETCDFCXX4/lib/libnetcdf_c++4.so
+#export  NETCDFLIB=$NETCDFDIR/libnetcdf.so 
+#export  NETCDFLIB_CPP=$NETCDFCXX4DIR/libnetcdf_c++4.so
+#export PATH=$PATH:/$NETCDF/bin
+#
+export LIBCONFIGDIR=$GITR_TOP_LEVEL/libconfigbuild
+export LIBCONFIGLIB=$LIBCONFIGDIR/lib/libconfig++.so
+#export LIBCONFIGPP_LIBRARIES=lconfig++
+#export LIBCONFIGPP_LIBRARY=lconfig++
+#export LIBCONFIGPP_STATIC_LIBRARY=
+export LIBCONFIG_INCLUDE_DIR=$LIBCONFIGDIR/include
+#export LIBCONFIGPP_INCLUDE_DIR=$LIBCONFIGDIR/include
+#export LIBCONFIG_LIBRARY=lconfig
+#export THRUST_INCLUDE_DIRS=$TQD_HOME/Code/thrust
+#export THRUST_INCLUDE_DIR=$TQD_HOME/Code/thrust
+export THRUST_DIR=$GITR_TOP_LEVEL/thrust
+#export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$NETCDF/lib:$NETCDFCXX4/lib:$TQD_HOME/Code/openmpiBuild/lib