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Merge in updated master #11
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* Update biobloomtools - rebuild after bulk failure * Update CXXFLAGS
* rebuild selene-sdk * bump build number
Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
* Add r-circrnafull * Add "extra" section * Add run dependencies * Add missing dependencies
* pgscatalog-utils initial commit * drop LICENSE * bump version --------- Co-authored-by: Joshua Zhuang <[email protected]> Co-authored-by: mencian <[email protected]>
Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
* fraggenescan: add linux-aarch64 build Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> * Use Clang 15 for osx Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> --------- Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
* phyml: add linux-aarch64 build Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> * Use sse2neon.h to translate Intel SSE to ARM NEON for linux-aarch64 Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> --------- Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
* remove build failures * change meta to get a build
* Update DeepMicroClass recipe * Update DeepMicroClass recipe
* add usearch * fix lint * fix dash in version * fix typo
* Update meta.yaml * Update build.sh * Update meta.yaml * Add bracken as a dependency * Update meta.yaml * Update meta.yaml
* bump iqtree * re-add circleci limit * Make use of the JOBS variable * try building with large machine --------- Co-authored-by: Martin Grigorov <[email protected]> Co-authored-by: Joshua Zhuang <[email protected]>
* alignlib_lite: add linux-aarch64 build Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> * Try with Cython 0.x Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> * The license_file is not included in the sources tarball * Disable the test for Linux ARM64 to be able to test/debug locally Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> --------- Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> Co-authored-by: Joshua Zhuang <[email protected]>
* Bump to v0.0.13 * Debugging * Bugfix * Update patch * Update version * Update URL and sha256
* Update pyclone-vi to 0.1.4 * add run_exports * fix typo --------- Co-authored-by: mencian <[email protected]>
* add recipe argo * fix sha * Update recipes/argo/meta.yaml Co-authored-by: Martin Grigorov <[email protected]> --------- Co-authored-by: Martin Grigorov <[email protected]>
* Update tides-ml to 1.3.0 * Pin Python to <=3.11.7 Suggested by the following error: ERROR: Package 'tides-ml' requires a different Python: 3.11.9 not in '<=3.11.7' Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> --------- Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> Co-authored-by: Martin Tzvetanov Grigorov <[email protected]>
* clermontyping * clermontyping * adding .sh * additional changes from review * additional changes from review * additional changes from review * Copy clermonTyping.sh to $PREFIX/bin Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> --------- Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> Co-authored-by: Martin Tzvetanov Grigorov <[email protected]>
* Update Auspice to 2.56.0 See the changelog on the [Auspice releases page](https://github.com/nextstrain/auspice/releases/) for more details * Reset the build number --------- Co-authored-by: Martin Grigorov <[email protected]>
* Update deeplc to 2.2.37 * Update deeplc to 2.2.38
* Updated dependencies and restored tests * Added FluMutDB, required by FluMut * Update recipes/flumutdb/meta.yaml Co-authored-by: Martin Grigorov <[email protected]> * Fixed sha256 --------- Co-authored-by: Martin Grigorov <[email protected]>
* Update meta.yaml for piscem v0.9.0 * Update meta.yaml * Update build.sh * Update build.sh * Update build.sh * Update build.sh * Create build_rs.patch * Update meta.yaml
Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
* extract_fullseq: add linux-aarch64 build Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> * Build bmtagger the same way as in bmtool and bmfilter Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> --------- Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
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Please read the guidelines for Bioconda recipes before opening a pull request (PR).
General instructions
@BiocondaBot please add label
command.@bioconda/core
in a comment.Instructions for avoiding API, ABI, and CLI breakage issues
Conda is able to record and lock (a.k.a. pin) dependency versions used at build time of other recipes.
This way, one can avoid that expectations of a downstream recipe with regards to API, ABI, or CLI are violated by later changes in the recipe.
If not already present in the meta.yaml, make sure to specify
run_exports
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run_exports
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being one of:{{ pin_subpackage("myrecipe", max_pin="x") }}
{{ pin_subpackage("myrecipe", max_pin="x.x") }}
{{ pin_subpackage("myrecipe", max_pin="x.x") }}
(in such a case, please add a note that shortly mentions your evidence for that){{ pin_subpackage("myrecipe", max_pin="x.x.x") }}
(in such a case, please add a note that shortly mentions your evidence for that){{ pin_subpackage("myrecipe", max_pin=None) }}
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Please use the following BiocondaBot commands:
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