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Regenerated with latest nml libs
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@pgleeson
pgleeson committed Jun 11, 2024
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Showing 36 changed files with 63 additions and 61 deletions.
2 changes: 2 additions & 0 deletions NeuroML2/prototypes/L23Pyr_SmithEtAl2013/L23_NoHotSpot.cell.nml
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<channelDensity ionChannel="ca" id="ca_soma" condDensity = "5e-5 S_per_cm2" ion="ca" segmentGroup="soma_group" erev="140.67523 mV"/>

<spikeThresh value="10mV"/>

<specificCapacitance value="1 uF_per_cm2" />

<initMembPotential value="-75.0 mV"/>
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6 changes: 3 additions & 3 deletions examples/ACNet.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="ACNet">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="ACNet">
<notes>

This NeuroML 2 file was generated by OpenCortex v0.1.18 using:
libNeuroML v0.5.9
pyNeuroML v1.2.13
libNeuroML v0.6.0
pyNeuroML v1.3.0

</notes>
<property tag="Network seed" value="1234"/>
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6 changes: 3 additions & 3 deletions examples/Balanced.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="Balanced">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="Balanced">
<notes>

This NeuroML 2 file was generated by OpenCortex v0.1.18 using:
libNeuroML v0.5.9
pyNeuroML v1.2.13
libNeuroML v0.6.0
pyNeuroML v1.3.0

</notes>
<property tag="Network seed" value="1234"/>
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6 changes: 3 additions & 3 deletions examples/Balanced_240cells_36926conns.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="Balanced_240cells_36926conns">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="Balanced_240cells_36926conns">
<notes>

This NeuroML 2 file was generated by OpenCortex v0.1.18 using:
libNeuroML v0.5.9
pyNeuroML v1.2.13
libNeuroML v0.6.0
pyNeuroML v1.3.0

</notes>
<property tag="Network seed" value="1234"/>
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6 changes: 3 additions & 3 deletions examples/Balanced_610cells_0conns.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="Balanced_610cells_0conns">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="Balanced_610cells_0conns">
<notes>

This NeuroML 2 file was generated by OpenCortex v0.1.18 using:
libNeuroML v0.5.9
pyNeuroML v1.2.13
libNeuroML v0.6.0
pyNeuroML v1.3.0

</notes>
<property tag="Network seed" value="1234"/>
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6 changes: 3 additions & 3 deletions examples/Balanced_610cells_213550conns.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="Balanced_610cells_213550conns">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="Balanced_610cells_213550conns">
<notes>

This NeuroML 2 file was generated by OpenCortex v0.1.18 using:
libNeuroML v0.5.9
pyNeuroML v1.2.13
libNeuroML v0.6.0
pyNeuroML v1.3.0

</notes>
<property tag="Network seed" value="1234"/>
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6 changes: 3 additions & 3 deletions examples/Complex.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="Complex">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="Complex">
<notes>

This NeuroML 2 file was generated by OpenCortex v0.1.18 using:
libNeuroML v0.5.9
pyNeuroML v1.2.13
libNeuroML v0.6.0
pyNeuroML v1.3.0

</notes>
<property tag="Network seed" value="1234"/>
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6 changes: 3 additions & 3 deletions examples/Deterministic.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="Deterministic">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="Deterministic">
<notes>

This NeuroML 2 file was generated by OpenCortex v0.1.18 using:
libNeuroML v0.5.9
pyNeuroML v1.2.13
libNeuroML v0.6.0
pyNeuroML v1.3.0

</notes>
<property tag="Network seed" value="1234"/>
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6 changes: 3 additions & 3 deletions examples/GapJunctions.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="GapJunctions">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="GapJunctions">
<notes>

This NeuroML 2 file was generated by OpenCortex v0.1.18 using:
libNeuroML v0.5.9
pyNeuroML v1.2.13
libNeuroML v0.6.0
pyNeuroML v1.3.0

</notes>
<property tag="Network seed" value="1234"/>
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2 changes: 1 addition & 1 deletion examples/HDF5/LEMS_ACNet.xml
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<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
This LEMS file has been automatically generated using PyNeuroML v1.3.0 (libNeuroML v0.6.0)
-->

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2 changes: 1 addition & 1 deletion examples/HDF5/LEMS_IClamps.xml
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<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
This LEMS file has been automatically generated using PyNeuroML v1.3.0 (libNeuroML v0.6.0)
-->

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2 changes: 1 addition & 1 deletion examples/HDF5/LEMS_SpikingNet.xml
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<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
This LEMS file has been automatically generated using PyNeuroML v1.3.0 (libNeuroML v0.6.0)
-->

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Binary file modified examples/HDF5/SpikingNet.net.nml.h5
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6 changes: 3 additions & 3 deletions examples/IClamps.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="IClamps">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="IClamps">
<notes>

This NeuroML 2 file was generated by OpenCortex v0.1.18 using:
libNeuroML v0.5.9
pyNeuroML v1.2.13
libNeuroML v0.6.0
pyNeuroML v1.3.0

</notes>
<property tag="Network seed" value="1234"/>
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6 changes: 3 additions & 3 deletions examples/L23TraubDemo.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="L23TraubDemo">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="L23TraubDemo">
<notes>

This NeuroML 2 file was generated by OpenCortex v0.1.18 using:
libNeuroML v0.5.9
pyNeuroML v1.2.13
libNeuroML v0.6.0
pyNeuroML v1.3.0

</notes>
<property tag="Network seed" value="1234"/>
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2 changes: 1 addition & 1 deletion examples/LEMS_ACNet.xml
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<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
This LEMS file has been automatically generated using PyNeuroML v1.3.0 (libNeuroML v0.6.0)
-->

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2 changes: 1 addition & 1 deletion examples/LEMS_Balanced.xml
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<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
This LEMS file has been automatically generated using PyNeuroML v1.3.0 (libNeuroML v0.6.0)
-->

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2 changes: 1 addition & 1 deletion examples/LEMS_Balanced_610cells_0conns.xml
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<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
This LEMS file has been automatically generated using PyNeuroML v1.3.0 (libNeuroML v0.6.0)
-->

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2 changes: 1 addition & 1 deletion examples/LEMS_Complex.xml
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<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
This LEMS file has been automatically generated using PyNeuroML v1.3.0 (libNeuroML v0.6.0)
-->

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2 changes: 1 addition & 1 deletion examples/LEMS_Deterministic.xml
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<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
This LEMS file has been automatically generated using PyNeuroML v1.3.0 (libNeuroML v0.6.0)
-->

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2 changes: 1 addition & 1 deletion examples/LEMS_GapJunctions.xml
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<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
This LEMS file has been automatically generated using PyNeuroML v1.3.0 (libNeuroML v0.6.0)
-->

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2 changes: 1 addition & 1 deletion examples/LEMS_IClamps.xml
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<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
This LEMS file has been automatically generated using PyNeuroML v1.3.0 (libNeuroML v0.6.0)
-->

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2 changes: 1 addition & 1 deletion examples/LEMS_L23TraubDemo.xml
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<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
This LEMS file has been automatically generated using PyNeuroML v1.3.0 (libNeuroML v0.6.0)
-->

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2 changes: 1 addition & 1 deletion examples/LEMS_Recording.xml
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<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
This LEMS file has been automatically generated using PyNeuroML v1.3.0 (libNeuroML v0.6.0)
-->

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2 changes: 1 addition & 1 deletion examples/LEMS_SimpleNet.xml
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<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
This LEMS file has been automatically generated using PyNeuroML v1.3.0 (libNeuroML v0.6.0)
-->

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2 changes: 1 addition & 1 deletion examples/LEMS_SpikingNet.xml
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<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
This LEMS file has been automatically generated using PyNeuroML v1.3.0 (libNeuroML v0.6.0)
-->

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2 changes: 1 addition & 1 deletion examples/LEMS_VClamp.xml
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<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
This LEMS file has been automatically generated using PyNeuroML v1.3.0 (libNeuroML v0.6.0)
-->

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2 changes: 1 addition & 1 deletion examples/LEMS_Weights.xml
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<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
This LEMS file has been automatically generated using PyNeuroML v1.3.0 (libNeuroML v0.6.0)
-->

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6 changes: 3 additions & 3 deletions examples/Recording.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="Recording">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="Recording">
<notes>

This NeuroML 2 file was generated by OpenCortex v0.1.18 using:
libNeuroML v0.5.9
pyNeuroML v1.2.13
libNeuroML v0.6.0
pyNeuroML v1.3.0

</notes>
<property tag="Network seed" value="1234"/>
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6 changes: 3 additions & 3 deletions examples/SimpleNet.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="SimpleNet">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="SimpleNet">
<notes>

This NeuroML 2 file was generated by OpenCortex v0.1.18 using:
libNeuroML v0.5.9
pyNeuroML v1.2.13
libNeuroML v0.6.0
pyNeuroML v1.3.0

</notes>
<property tag="Network seed" value="1234"/>
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6 changes: 3 additions & 3 deletions examples/SpikingNet.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="SpikingNet">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="SpikingNet">
<notes>

This NeuroML 2 file was generated by OpenCortex v0.1.18 using:
libNeuroML v0.5.9
pyNeuroML v1.2.13
libNeuroML v0.6.0
pyNeuroML v1.3.0

</notes>
<property tag="Network seed" value="1234"/>
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6 changes: 3 additions & 3 deletions examples/VClamp.net.nml
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@@ -1,9 +1,9 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="VClamp">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="VClamp">
<notes>

This NeuroML 2 file was generated by OpenCortex v0.1.18 using:
libNeuroML v0.5.9
pyNeuroML v1.2.13
libNeuroML v0.6.0
pyNeuroML v1.3.0

</notes>
<property tag="Network seed" value="1234"/>
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6 changes: 3 additions & 3 deletions examples/Weights.net.nml
View file
Original file line number Diff line number Diff line change
@@ -1,9 +1,9 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="Weights">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="Weights">
<notes>

This NeuroML 2 file was generated by OpenCortex v0.1.18 using:
libNeuroML v0.5.9
pyNeuroML v1.2.13
libNeuroML v0.6.0
pyNeuroML v1.3.0

</notes>
<property tag="Network seed" value="1234"/>
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