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OpenSourceBrain · Dec 14, 2023 · 1abcf6d · 1abcf6d
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diff --git a/examples/ACNet.net.nml b/examples/ACNet.net.nml
@@ -2,8 +2,8 @@
     <notes>
 
 This NeuroML 2 file was generated by OpenCortex v0.1.18 using: 
-    libNeuroML v0.5.5
-    pyNeuroML v1.1.1
+    libNeuroML v0.5.8
+    pyNeuroML v1.1.10
 
     </notes>
     <property tag="Network seed" value="1234"/>

diff --git a/examples/Balanced.net.nml b/examples/Balanced.net.nml
@@ -2,8 +2,8 @@
     <notes>
 
 This NeuroML 2 file was generated by OpenCortex v0.1.18 using: 
-    libNeuroML v0.5.5
-    pyNeuroML v1.1.1
+    libNeuroML v0.5.8
+    pyNeuroML v1.1.10
 
     </notes>
     <property tag="Network seed" value="1234"/>

diff --git a/examples/Balanced_240cells_36926conns.net.nml b/examples/Balanced_240cells_36926conns.net.nml
@@ -2,8 +2,8 @@
     <notes>
 
 This NeuroML 2 file was generated by OpenCortex v0.1.18 using: 
-    libNeuroML v0.5.5
-    pyNeuroML v1.1.1
+    libNeuroML v0.5.8
+    pyNeuroML v1.1.10
 
     </notes>
     <property tag="Network seed" value="1234"/>

diff --git a/examples/Balanced_610cells_0conns.net.nml b/examples/Balanced_610cells_0conns.net.nml
@@ -2,8 +2,8 @@
     <notes>
 
 This NeuroML 2 file was generated by OpenCortex v0.1.18 using: 
-    libNeuroML v0.5.5
-    pyNeuroML v1.1.1
+    libNeuroML v0.5.8
+    pyNeuroML v1.1.10
 
     </notes>
     <property tag="Network seed" value="1234"/>

diff --git a/examples/Balanced_610cells_213550conns.net.nml b/examples/Balanced_610cells_213550conns.net.nml
@@ -2,8 +2,8 @@
     <notes>
 
 This NeuroML 2 file was generated by OpenCortex v0.1.18 using: 
-    libNeuroML v0.5.5
-    pyNeuroML v1.1.1
+    libNeuroML v0.5.8
+    pyNeuroML v1.1.10
 
     </notes>
     <property tag="Network seed" value="1234"/>

diff --git a/examples/Complex.net.nml b/examples/Complex.net.nml
@@ -2,8 +2,8 @@
     <notes>
 
 This NeuroML 2 file was generated by OpenCortex v0.1.18 using: 
-    libNeuroML v0.5.5
-    pyNeuroML v1.1.1
+    libNeuroML v0.5.8
+    pyNeuroML v1.1.10
 
     </notes>
     <property tag="Network seed" value="1234"/>

diff --git a/examples/Deterministic.net.nml b/examples/Deterministic.net.nml
@@ -2,8 +2,8 @@
     <notes>
 
 This NeuroML 2 file was generated by OpenCortex v0.1.18 using: 
-    libNeuroML v0.5.5
-    pyNeuroML v1.1.1
+    libNeuroML v0.5.8
+    pyNeuroML v1.1.10
 
     </notes>
     <property tag="Network seed" value="1234"/>

diff --git a/examples/GapJunctions.net.nml b/examples/GapJunctions.net.nml
@@ -2,8 +2,8 @@
     <notes>
 
 This NeuroML 2 file was generated by OpenCortex v0.1.18 using: 
-    libNeuroML v0.5.5
-    pyNeuroML v1.1.1
+    libNeuroML v0.5.8
+    pyNeuroML v1.1.10
 
     </notes>
     <property tag="Network seed" value="1234"/>

diff --git a/examples/HDF5/ACNet.net.nml.h5 b/examples/HDF5/ACNet.net.nml.h5
diff --git a/examples/HDF5/IClamps.net.nml.h5 b/examples/HDF5/IClamps.net.nml.h5
diff --git a/examples/HDF5/LEMS_ACNet.xml b/examples/HDF5/LEMS_ACNet.xml
@@ -1,19 +1,19 @@
 <Lems>
-    
+
     <!-- 
 
-        This LEMS file has been automatically generated using PyNeuroML v1.1.1 (libNeuroML v0.5.5)
+        This LEMS file has been automatically generated using PyNeuroML v1.1.10 (libNeuroML v0.5.8)
 
      -->
-    
+
     <!-- Specify which component to run -->
     <Target component="Sim_ACNet" reportFile="report.acnet.txt"/>
 
     <!-- Include core NeuroML2 ComponentType definitions -->
     <Include file="Cells.xml"/>
     <Include file="Networks.xml"/>
     <Include file="Simulation.xml"/>
-    
+
     <Include file="ACNet/pyr_4_sym.cell.nml"/>
     <Include file="ACNet/Ca_conc.nml"/>
     <Include file="ACNet/Ca_pyr.channel.nml"/>
@@ -26,9 +26,8 @@
     <Include file="ACNet/LeakConductance_bask.channel.nml"/>
     <Include file="ACNet/Na_bask.channel.nml"/>
     <Include file="ACNet.net.nml.h5"/>
-   
+
     <Simulation id="Sim_ACNet" length="250ms" step="0.025ms" target="ACNet" seed="12345">  <!-- Note seed: ensures same random numbers used every run -->
-
         <Display id="Display_pop_bask_v" title="Plots of Display_pop_bask_v" timeScale="1ms" xmin="-25.0" xmax="275.0" ymin="-80" ymax="40">
             <Line id="pop_bask_0_bask_0_v" quantity="pop_bask/0/bask/0/v" scale="1mV" color="#d54f33" timeScale="1ms"/>
             <Line id="pop_bask_1_bask_0_v" quantity="pop_bask/1/bask/0/v" scale="1mV" color="#0534e4" timeScale="1ms"/>
@@ -43,7 +42,7 @@
             <Line id="pop_bask_10_bask_0_v" quantity="pop_bask/10/bask/0/v" scale="1mV" color="#dda9d2" timeScale="1ms"/>
             <Line id="pop_bask_11_bask_0_v" quantity="pop_bask/11/bask/0/v" scale="1mV" color="#85ad96" timeScale="1ms"/>
         </Display>
-        
+
         <Display id="Display_pop_pyr_v" title="Plots of Display_pop_pyr_v" timeScale="1ms" xmin="-25.0" xmax="275.0" ymin="-80" ymax="40">
             <Line id="pop_pyr_0_pyr_4_sym_0_v" quantity="pop_pyr/0/pyr_4_sym/0/v" scale="1mV" color="#59438f" timeScale="1ms"/>
             <Line id="pop_pyr_1_pyr_4_sym_0_v" quantity="pop_pyr/1/pyr_4_sym/0/v" scale="1mV" color="#5fa56f" timeScale="1ms"/>
@@ -94,73 +93,73 @@
             <Line id="pop_pyr_46_pyr_4_sym_0_v" quantity="pop_pyr/46/pyr_4_sym/0/v" scale="1mV" color="#505fca" timeScale="1ms"/>
             <Line id="pop_pyr_47_pyr_4_sym_0_v" quantity="pop_pyr/47/pyr_4_sym/0/v" scale="1mV" color="#c5a380" timeScale="1ms"/>
         </Display>
-        
+
         <OutputFile id="Sim_ACNet_pop_bask_v_dat" fileName="Sim_ACNet.pop_bask.v.dat">
-            <OutputColumn id="pop_bask_0_bask_0_v" quantity="pop_bask/0/bask/0/v"/> 
-            <OutputColumn id="pop_bask_1_bask_0_v" quantity="pop_bask/1/bask/0/v"/> 
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-            <OutputColumn id="pop_bask_3_bask_0_v" quantity="pop_bask/3/bask/0/v"/> 
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-            <OutputColumn id="pop_bask_6_bask_0_v" quantity="pop_bask/6/bask/0/v"/> 
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-            <OutputColumn id="pop_bask_11_bask_0_v" quantity="pop_bask/11/bask/0/v"/> 
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+            <OutputColumn id="pop_bask_1_bask_0_v" quantity="pop_bask/1/bask/0/v"/>
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+            <OutputColumn id="pop_bask_11_bask_0_v" quantity="pop_bask/11/bask/0/v"/>
         </OutputFile>
-        
+
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         </OutputFile>
-        
+
     </Simulation>
 
 </Lems>
diff --git a/examples/HDF5/LEMS_IClamps.xml b/examples/HDF5/LEMS_IClamps.xml
@@ -1,19 +1,19 @@
 <Lems>
-    
+
     <!-- 
 
-        This LEMS file has been automatically generated using PyNeuroML v1.1.1 (libNeuroML v0.5.5)
+        This LEMS file has been automatically generated using PyNeuroML v1.1.10 (libNeuroML v0.5.8)
 
      -->
-    
+
     <!-- Specify which component to run -->
     <Target component="Sim_IClamps" reportFile="report.iclamp.h5.txt"/>
 
     <!-- Include core NeuroML2 ComponentType definitions -->
     <Include file="Cells.xml"/>
     <Include file="Networks.xml"/>
     <Include file="Simulation.xml"/>
-    
+
     <Include file="IClamps/RS.cell.nml"/>
     <Include file="IClamps/pyr_4_sym_soma.cell.nml"/>
     <Include file="IClamps/Ca_conc.nml"/>
@@ -23,25 +23,24 @@
     <Include file="IClamps/LeakConductance_pyr.channel.nml"/>
     <Include file="IClamps/Na_pyr.channel.nml"/>
     <Include file="IClamps.net.nml.h5"/>
-   
+
     <Simulation id="Sim_IClamps" length="500ms" step="0.005ms" target="IClamps" seed="12345">  <!-- Note seed: ensures same random numbers used every run -->
-
         <Display id="DispPop__popHH" title="Membrane potentials of cells in popHH" timeScale="1ms" xmin="-50.0" xmax="550.0" ymin="-90" ymax="50">
             <Line id="popHH[0]: v" quantity="popHH/0/pyr_4_sym_soma/v" scale="1mV" color="#d54f33" timeScale="1ms"/>
         </Display>
-        
+
         <Display id="DispPop__popIzh" title="Membrane potentials of cells in popIzh" timeScale="1ms" xmin="-50.0" xmax="550.0" ymin="-90" ymax="50">
             <Line id="popIzh[0]: v" quantity="popIzh/0/RS/v" scale="1mV" color="#0534e4" timeScale="1ms"/>
         </Display>
-        
+
         <OutputFile id="Volts_file__popHH" fileName="Sim_IClamps.popHH.v.dat">
-            <OutputColumn id="v_popHH_0_pyr_4_sym_soma_v" quantity="popHH/0/pyr_4_sym_soma/v"/> 
+            <OutputColumn id="v_popHH_0_pyr_4_sym_soma_v" quantity="popHH/0/pyr_4_sym_soma/v"/>
         </OutputFile>
-        
+
         <OutputFile id="Volts_file__popIzh" fileName="Sim_IClamps.popIzh.v.dat">
-            <OutputColumn id="v_popIzh_0_RS_v" quantity="popIzh/0/RS/v"/> 
+            <OutputColumn id="v_popIzh_0_RS_v" quantity="popIzh/0/RS/v"/>
         </OutputFile>
-        
+
     </Simulation>
 
 </Lems>