2.0.0 release #1176

Sign in to view logs

Triggered via pull request October 9, 2024 13:54

nebfield

synchronize #382

integrate-utils-1.4.1

Status Cancelled

Total duration 13m 6s

Artifacts 4

ci.yml

on: pull_request

preload_docker / docker

preload_singularity / singularity

preload_ancestry / preload_reference

Matrix: pytest_workflow_docker

Matrix: standard_test_docker / docker

Matrix: standard_test_docker / singularity

Matrix: pytest_workflow_singularity

Matrix: standard_test_singularity / docker

Matrix: standard_test_singularity / singularity

ancestry_docker / docker

ancestry_docker / singularity

ancestry_vcf_docker / docker

ancestry_vcf_docker / singularity

ancestry_singularity / docker

ancestry_singularity / singularity

ancestry_vcf_singularity / docker

ancestry_vcf_singularity / singularity

Annotations

76 errors

pytest_workflow_singularity (pgscatalog test --pgs_id) / singularity

Process completed with exit code 1.

pytest_workflow_singularity (test make compatible subworkflow with bfile) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test make compatible subworkflow with bfile) / singularity

The operation was canceled.

pytest_workflow_singularity (plink2 testsmallmultiscore) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (plink2 testsmallmultiscore) / singularity

The operation was canceled.

pytest_workflow_singularity (test input check subworkflow) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test input check subworkflow) / singularity

The operation was canceled.

pytest_workflow_singularity (test input check subworkflow with PGS catalog API and whitespace) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test input check subworkflow with PGS catalog API and whitespace) / singularity

The operation was canceled.

pytest_workflow_singularity (plink2 testrelabelpvar) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (plink2 testrelabelpvar) / singularity

The operation was canceled.

pytest_workflow_singularity (pgscatalog test bad accession) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (pgscatalog test bad accession) / singularity

The operation was canceled.

pytest_workflow_singularity (pgscatalog test --efo_trait --pgp_id and --pgs_id) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (pgscatalog test --efo_trait --pgp_id and --pgs_id) / singularity

The operation was canceled.

pytest_workflow_singularity (test make compatible subworkflow with pfile) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test make compatible subworkflow with pfile) / singularity

The operation was canceled.

pytest_workflow_singularity (test input check subworkflow with PGS catalog API) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test input check subworkflow with PGS catalog API) / singularity

The operation was canceled.

pytest_workflow_singularity (test perfect apply score) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test perfect apply score) / singularity

The operation was canceled.

pytest_workflow_singularity (test input check subworkflow with liftover 37to38) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test input check subworkflow with liftover 37to38) / singularity

The operation was canceled.

pytest_workflow_singularity (plink2 testsmallscore) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (plink2 testsmallscore) / singularity

The operation was canceled.

pytest_workflow_singularity (test match combine module) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test match combine module) / singularity

The operation was canceled.

pytest_workflow_singularity (test combine scorefiles module) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test combine scorefiles module) / singularity

The operation was canceled.

pytest_workflow_singularity (test match module) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test match module) / singularity

The operation was canceled.

pytest_workflow_singularity (test apply score subworkflow) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test make compatible subworkflow with vcf) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test apply score subworkflow) / singularity

The operation was canceled.

pytest_workflow_singularity (test make compatible subworkflow with vcf) / singularity

The operation was canceled.

pytest_workflow_singularity (test input check subworkflow with liftover 38to37) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test input check subworkflow with liftover 38to37) / singularity

The operation was canceled.

pytest_workflow_docker (pgscatalog test --pgs_id) / docker

Process completed with exit code 1.

pytest_workflow_docker (test match module) / docker

Process completed with exit code 1.

pytest_workflow_docker (test input check subworkflow) / docker

FailFast: cancelling since parallel instance has failed

pytest_workflow_docker (plink2 testsmallscore) / docker

FailFast: cancelling since parallel instance has failed

pytest_workflow_docker (plink2 testsmallscore) / docker

The operation was canceled.

pytest_workflow_docker (pgscatalog test bad accession) / docker

FailFast: cancelling since parallel instance has failed

pytest_workflow_docker (pgscatalog test --efo_trait --pgp_id and --pgs_id) / docker

FailFast: cancelling since parallel instance has failed

pytest_workflow_docker (pgscatalog test --efo_trait --pgp_id and --pgs_id) / docker

Process completed with exit code 1.

pytest_workflow_docker (pgscatalog test --efo_trait --pgp_id and --pgs_id) / docker

The operation was canceled.

pytest_workflow_docker (pgscatalog test good and bad accessions GRCh38) / docker

FailFast: cancelling since parallel instance has failed

pytest_workflow_docker (test input check subworkflow with liftover 37to38) / docker

FailFast: cancelling since parallel instance has failed

pytest_workflow_docker (test input check subworkflow with liftover 37to38) / docker

The operation was canceled.

pytest_workflow_docker (plink2 testmultiscorefail) / docker

FailFast: cancelling since parallel instance has failed

pytest_workflow_docker (plink2 testmultiscorefail) / docker

The operation was canceled.

pytest_workflow_docker (test match combine module) / docker

FailFast: cancelling since parallel instance has failed

pytest_workflow_docker (test match combine module) / docker

The operation was canceled.

pytest_workflow_docker (test input check subworkflow with PGS catalog API) / docker

FailFast: cancelling since parallel instance has failed

pytest_workflow_docker (test input check subworkflow with PGS catalog API) / docker

The operation was canceled.

pytest_workflow_docker (plink2 testmultiscore) / docker

FailFast: cancelling since parallel instance has failed

pytest_workflow_docker (plink2 testmultiscore) / docker

The operation was canceled.

pytest_workflow_docker (test input check subworkflow with liftover 38to37) / docker

FailFast: cancelling since parallel instance has failed

pytest_workflow_docker (test input check subworkflow with liftover 38to37) / docker

The operation was canceled.

pytest_workflow_docker (test perfect apply score) / docker

FailFast: cancelling since parallel instance has failed

pytest_workflow_docker (test perfect apply score) / docker

The operation was canceled.

pytest_workflow_docker (test input check subworkflow with PGS catalog API and whitespace) / docker

FailFast: cancelling since parallel instance has failed

pytest_workflow_docker (test input check subworkflow with PGS catalog API and whitespace) / docker

The operation was canceled.

pytest_workflow_docker (test combine scorefiles module) / docker

FailFast: cancelling since parallel instance has failed

pytest_workflow_docker (test combine scorefiles module) / docker

The operation was canceled.

pytest_workflow_docker (test apply score subworkflow) / docker

FailFast: cancelling since parallel instance has failed

pytest_workflow_docker (test apply score subworkflow) / docker

The operation was canceled.

pytest_workflow_docker (test make compatible subworkflow with bfile) / docker

FailFast: cancelling since parallel instance has failed

pytest_workflow_docker (test make compatible subworkflow with bfile) / docker

The operation was canceled.

ancestry_vcf_singularity / singularity

Process completed with exit code 1.

ancestry_singularity / singularity

Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run

ancestry_singularity / singularity

Process completed with exit code 1.

ancestry_docker / docker

Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run

ancestry_docker / docker

Process completed with exit code 1.

ancestry_vcf_docker / docker

Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run

ancestry_vcf_docker / docker

Process completed with exit code 1.

Artifacts

Produced during runtime

Name	Size
logs-docker-pgscatalog test --pgs_id	4.55 KB
logs-docker-test match module	773 KB
logs-singularity-ancestry	3.51 KB
logs-singularity-pgscatalog test --pgs_id	4.55 KB