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2.0.0 release #1183

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2.0.0 release

2.0.0 release #1183

Re-run triggered October 15, 2024 09:47
@smlmbrtsmlmbrt
#382
integrate-utils-1.4.1
Status Failure
Total duration 6h 0m 39s
Artifacts 9

ci.yml

on: pull_request
preload_docker  /  docker
1m 40s
preload_docker / docker
preload_singularity  /  singularity
2m 32s
preload_singularity / singularity
preload_ancestry  /  preload_reference
6s
preload_ancestry / preload_reference
Matrix: pytest_workflow_docker
Matrix: standard_test_docker / docker
Matrix: standard_test_docker / singularity
Matrix: pytest_workflow_singularity
Matrix: standard_test_singularity / docker
Matrix: standard_test_singularity / singularity
ancestry_singularity  /  docker
0s
ancestry_singularity / docker
ancestry_singularity  /  singularity
6h 0m
ancestry_singularity / singularity
ancestry_vcf_singularity  /  docker
0s
ancestry_vcf_singularity / docker
ancestry_vcf_singularity  /  singularity
6h 0m
ancestry_vcf_singularity / singularity
ancestry_docker  /  docker
8m 1s
ancestry_docker / docker
ancestry_docker  /  singularity
0s
ancestry_docker / singularity
ancestry_vcf_docker  /  docker
9m 1s
ancestry_vcf_docker / docker
ancestry_vcf_docker  /  singularity
0s
ancestry_vcf_docker / singularity
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46 errors and 2 warnings
standard_test_singularity / singularity (test, singularity, latest)
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testsmallscore) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testmultiscore) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testrelabelpvar) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (pgscatalog test --efo_trait --pgp_id and --pgs_id) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 vcf) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testsmallmultiscore) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testmultiscorefail) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testrelabelbim) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testrelabelbim) / singularity
The operation was canceled.
pytest_workflow_singularity (plink2 testrelabelbim) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (test perfect apply score) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test perfect apply score) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with liftover 37to38) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with liftover 37to38) / singularity
The operation was canceled.
standard_test_singularity / singularity (test, singularity, 23.10.0)
Process completed with exit code 1.
pytest_workflow_singularity (test input check subworkflow with liftover 38to37) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with liftover 38to37) / singularity
The operation was canceled.
pytest_workflow_singularity (test make compatible subworkflow with vcf) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test make compatible subworkflow with vcf) / singularity
The operation was canceled.
pytest_workflow_singularity (test combine scorefiles module) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test combine scorefiles module) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with PGS catalog API and whitespace) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with PGS catalog API and whitespace) / singularity
The operation was canceled.
pytest_workflow_singularity (test make compatible subworkflow with bfile) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test make compatible subworkflow with bfile) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow) / singularity
The operation was canceled.
pytest_workflow_singularity (test match combine module) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test match combine module) / singularity
The operation was canceled.
pytest_workflow_singularity (test make compatible subworkflow with pfile) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test make compatible subworkflow with pfile) / singularity
The operation was canceled.
pytest_workflow_singularity (plink2 testscore) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testscore) / singularity
The operation was canceled.
pytest_workflow_singularity (test match module) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test match module) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with PGS catalog API) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with PGS catalog API) / singularity
The operation was canceled.
pytest_workflow_singularity (test apply score subworkflow) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test apply score subworkflow) / singularity
The operation was canceled.
pytest_workflow_singularity (pgscatalog test --pgs_id) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (pgscatalog test --pgs_id) / singularity
The operation was canceled.
ancestry_vcf_singularity / singularity
The job running on runner GitHub Actions 31 has exceeded the maximum execution time of 360 minutes.
ancestry_vcf_singularity / singularity
The operation was canceled.
ancestry_singularity / singularity
The job running on runner GitHub Actions 32 has exceeded the maximum execution time of 360 minutes.
ancestry_singularity / singularity
The operation was canceled.
preload_singularity / singularity
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
preload_singularity / singularity
The following actions use a deprecated Node.js version and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Artifacts

Produced during runtime
Name Size
logs-singularity-pgscatalog test --efo_trait --pgp_id and --pgs_id
1.48 KB
logs-singularity-plink2 testmultiscore
340 KB
logs-singularity-plink2 testrelabelbim
340 KB
logs-singularity-plink2 testrelabelpvar
589 KB
logs-singularity-plink2 testsmallmultiscore
340 KB
logs-singularity-plink2 testsmallscore
340 KB
logs-singularity-plink2 vcf
589 KB