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Documentation update #1192

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Triggered via pull request January 31, 2025 12:08

smlmbrt

synchronize #402

docs-update

Status Failure

Total duration 6h 1m 10s

Artifacts 7

ci.yml

on: pull_request

preload_docker / docker

preload_singularity / singularity

preload_ancestry / preload_reference

Matrix: pytest_workflow_docker

Matrix: standard_test_docker / docker

Matrix: standard_test_docker / singularity

Matrix: pytest_workflow_singularity

Matrix: standard_test_singularity / docker

Matrix: standard_test_singularity / singularity

ancestry_docker / docker

ancestry_docker / singularity

ancestry_vcf_docker / docker

ancestry_vcf_docker / singularity

ancestry_singularity / docker

ancestry_singularity / singularity

ancestry_vcf_singularity / docker

ancestry_vcf_singularity / singularity

Annotations

51 errors

pytest_workflow_singularity (test combine scorefiles module) / singularity

Process completed with exit code 1.

pytest_workflow_singularity (plink2 vcf) / singularity

Process completed with exit code 1.

pytest_workflow_singularity (test match module) / singularity

Process completed with exit code 1.

pytest_workflow_singularity (plink2 testrelabelbim) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (plink2 testrelabelbim) / singularity

Process completed with exit code 1.

pytest_workflow_singularity (plink2 testrelabelpvar) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (plink2 testrelabelpvar) / singularity

Process completed with exit code 1.

pytest_workflow_singularity (pgscatalog test --efo_trait --pgp_id and --pgs_id) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (pgscatalog test --efo_trait --pgp_id and --pgs_id) / singularity

Process completed with exit code 1.

pytest_workflow_singularity (test match combine module) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test match combine module) / singularity

The operation was canceled.

pytest_workflow_singularity (plink2 testmultiscorefail) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test input check subworkflow with PGS catalog API) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test input check subworkflow with PGS catalog API) / singularity

The operation was canceled.

pytest_workflow_singularity (pgscatalog test good and bad accessions GRCh38) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (pgscatalog test good and bad accessions GRCh38) / singularity

The operation was canceled.

pytest_workflow_singularity (plink2 testscore) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (plink2 testscore) / singularity

The operation was canceled.

pytest_workflow_singularity (test make compatible subworkflow with pfile) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test make compatible subworkflow with pfile) / singularity

The operation was canceled.

pytest_workflow_singularity (test perfect apply score) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test perfect apply score) / singularity

The operation was canceled.

ancestry_singularity / singularity

Process completed with exit code 1.

pytest_workflow_singularity (test input check subworkflow) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test input check subworkflow) / singularity

The operation was canceled.

standard_test_singularity / singularity (test, singularity, latest)

Process completed with exit code 1.

pytest_workflow_singularity (pgscatalog test bad accession) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (pgscatalog test bad accession) / singularity

The operation was canceled.

pytest_workflow_singularity (plink2 testmultiscore) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (plink2 testmultiscore) / singularity

The operation was canceled.

pytest_workflow_singularity (test input check subworkflow with liftover 38to37) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test input check subworkflow with liftover 38to37) / singularity

The operation was canceled.

pytest_workflow_singularity (pgscatalog test --pgs_id) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (pgscatalog test --pgs_id) / singularity

The operation was canceled.

pytest_workflow_singularity (test input check subworkflow with liftover 37to38) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test input check subworkflow with liftover 37to38) / singularity

The operation was canceled.

pytest_workflow_singularity (plink2 testsmallmultiscore) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (plink2 testsmallmultiscore) / singularity

The operation was canceled.

pytest_workflow_singularity (test input check subworkflow with PGS catalog API and whitespace) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test input check subworkflow with PGS catalog API and whitespace) / singularity

The operation was canceled.

pytest_workflow_singularity (plink2 testsmallscore) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (plink2 testsmallscore) / singularity

The operation was canceled.

standard_test_singularity / singularity (test, singularity, 23.10.0)

Process completed with exit code 1.

pytest_workflow_singularity (test apply score subworkflow) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test apply score subworkflow) / singularity

The operation was canceled.

pytest_workflow_singularity (test make compatible subworkflow with bfile) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test make compatible subworkflow with bfile) / singularity

The operation was canceled.

pytest_workflow_singularity (test make compatible subworkflow with vcf) / singularity

FailFast: cancelling since parallel instance has failed

pytest_workflow_singularity (test make compatible subworkflow with vcf) / singularity

The operation was canceled.

ancestry_vcf_singularity / singularity

The job running on runner GitHub Actions 39 has exceeded the maximum execution time of 360 minutes.

ancestry_vcf_singularity / singularity

The operation was canceled.

Artifacts

Produced during runtime

Name	Size
logs-singularity-ancestry	2.7 KB
logs-singularity-pgscatalog test --efo_trait --pgp_id and --pgs_id	1.49 KB
logs-singularity-plink2 testrelabelbim	340 KB
logs-singularity-plink2 testrelabelpvar	589 KB
logs-singularity-plink2 vcf	589 KB
logs-singularity-test combine scorefiles module	1.42 KB
logs-singularity-test match module	353 KB