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Documentation update #1194

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Documentation update

Documentation update #1194

Triggered via pull request February 7, 2025 12:15
@smlmbrtsmlmbrt
synchronize #402
docs-update
Status Failure
Total duration 10m 41s
Artifacts 10

ci.yml

on: pull_request
preload_docker  /  docker
2m 2s
preload_docker / docker
preload_singularity  /  singularity
44s
preload_singularity / singularity
preload_ancestry  /  preload_reference
8s
preload_ancestry / preload_reference
Matrix: pytest_workflow_docker
Matrix: standard_test_docker / docker
Matrix: standard_test_docker / singularity
Matrix: pytest_workflow_singularity
Matrix: standard_test_singularity / docker
Matrix: standard_test_singularity / singularity
ancestry_docker  /  docker
7m 41s
ancestry_docker / docker
ancestry_docker  /  singularity
0s
ancestry_docker / singularity
ancestry_vcf_docker  /  docker
8m 18s
ancestry_vcf_docker / docker
ancestry_vcf_docker  /  singularity
0s
ancestry_vcf_docker / singularity
ancestry_singularity  /  docker
0s
ancestry_singularity / docker
ancestry_singularity  /  singularity
48s
ancestry_singularity / singularity
ancestry_vcf_singularity  /  docker
0s
ancestry_vcf_singularity / docker
ancestry_vcf_singularity  /  singularity
50s
ancestry_vcf_singularity / singularity
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48 errors
standard_test_singularity / singularity (test, singularity, latest)
Process completed with exit code 1.
pytest_workflow_singularity (plink2 vcf) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testsmallscore) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (pgscatalog test --efo_trait --pgp_id and --pgs_id) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testmultiscore) / singularity
Process completed with exit code 1.
standard_test_singularity / singularity (test, singularity, 23.10.0)
Process completed with exit code 1.
pytest_workflow_singularity (pgscatalog test --pgs_id) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (pgscatalog test --pgs_id) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (test combine scorefiles module) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (test match module) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test match module) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testscore) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testscore) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testscore) / singularity
The operation was canceled.
pytest_workflow_singularity (pgscatalog test bad accession) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testrelabelpvar) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testrelabelpvar) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (test perfect apply score) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test perfect apply score) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with liftover 37to38) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with liftover 37to38) / singularity
The operation was canceled.
pytest_workflow_singularity (test make compatible subworkflow with bfile) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test make compatible subworkflow with bfile) / singularity
The operation was canceled.
pytest_workflow_singularity (pgscatalog test good and bad accessions GRCh38) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (pgscatalog test good and bad accessions GRCh38) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with PGS catalog API) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with PGS catalog API) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with liftover 38to37) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with liftover 38to37) / singularity
The operation was canceled.
pytest_workflow_singularity (test match combine module) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test match combine module) / singularity
The operation was canceled.
ancestry_singularity / singularity
Process completed with exit code 1.
ancestry_vcf_singularity / singularity
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
ancestry_vcf_singularity / singularity
Process completed with exit code 1.
pytest_workflow_singularity (test make compatible subworkflow with pfile) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test make compatible subworkflow with pfile) / singularity
The operation was canceled.
pytest_workflow_singularity (test apply score subworkflow) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test apply score subworkflow) / singularity
The operation was canceled.
pytest_workflow_singularity (test make compatible subworkflow with vcf) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test make compatible subworkflow with vcf) / singularity
The operation was canceled.
pytest_workflow_singularity (plink2 testrelabelbim) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testrelabelbim) / singularity
The operation was canceled.
pytest_workflow_singularity (plink2 testsmallmultiscore) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testsmallmultiscore) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with PGS catalog API and whitespace) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with PGS catalog API and whitespace) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow) / singularity
The operation was canceled.

Artifacts

Produced during runtime
Name Size
logs-singularity-ancestry
2.68 KB
logs-singularity-pgscatalog test --efo_trait --pgp_id and --pgs_id
1.48 KB
logs-singularity-pgscatalog test --pgs_id
1.34 KB
logs-singularity-plink2 testmultiscore
340 KB
logs-singularity-plink2 testrelabelpvar
589 KB
logs-singularity-plink2 testscore
340 KB
logs-singularity-plink2 testsmallscore
340 KB
logs-singularity-plink2 vcf
589 KB
logs-singularity-test combine scorefiles module
1.43 KB
logs-singularity-test match module
353 KB