Summary
Jobs
preload_ancestry
preload_docker
preload_singularity
standard_test_docker
pytest_workflow_docker
ancestry_docker
ancestry_vcf_docker
standard_test_singularity
pytest_workflow_singularity (test input check subworkflow)
pytest_workflow_singularity (test input check subworkflow with PGS catalog API)
pytest_workflow_singularity (test input check subworkflow with PGS catalog API and whitespace)
pytest_workflow_singularity (test make compatible subworkflow with bfile)
pytest_workflow_singularity (test make compatible subworkflow with vcf)
pytest_workflow_singularity (test make compatible subworkflow with pfile)
pytest_workflow_singularity (test input check subworkflow with liftover 38to37)
pytest_workflow_singularity (test input check subworkflow with liftover 37to38)
pytest_workflow_singularity (test apply score subworkflow)
pytest_workflow_singularity (test perfect apply score)
pytest_workflow_singularity (test combine scorefiles module)
pytest_workflow_singularity (test match module)
pytest_workflow_singularity (test match combine module)
pytest_workflow_singularity (plink2 testrelabelpvar)
pytest_workflow_singularity (plink2 testscore)
pytest_workflow_singularity (plink2 testsmallscore)
pytest_workflow_singularity (plink2 testmultiscore)
pytest_workflow_singularity (plink2 testsmallmultiscore)
pytest_workflow_singularity (plink2 testmultiscorefail)
pytest_workflow_singularity (plink2 vcf)
pytest_workflow_singularity (plink2 testrelabelbim)
pytest_workflow_singularity (pgscatalog test --pgs_id)
pytest_workflow_singularity (pgscatalog test --efo_trait --pgp_id and --pgs_id)
pytest_workflow_singularity (pgscatalog test bad accession)
pytest_workflow_singularity (pgscatalog test good and bad accessions GRCh38)
ancestry_singularity
ancestry_vcf_singularity
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