Write consistent column sets to variant information files #330
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* Update SamplesheetParser.groovy * fix multiple samplesheet error message --------- Co-authored-by: Benjamin Wingfield <[email protected]>
smlmbrt
approved these changes
Jul 3, 2024
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This should work. Although, it might be more useful to users if within match_variants/match_combine:
- Read pvar header lines
- map header lines to schema, set all other headers to str
- drop non-standard columns
This would also allow us to run the matching directly on non-standard VCFs and make pygscatalog more robust.
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pgscatalog-matchreads pvar files with extra columns it can triggerpolars.exceptions.ComputeError: found more fields than defined in 'Schema'closes #324