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46 Open 28 Closed
46 Open 28 Closed
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Issues list

Why Ipdsummary requires subreads instead of HiFi reads?
#104 opened Dec 7, 2024 by wshuai294
BAM file of ipdSummary step
#103 opened Nov 22, 2024 by lonestarling
ipdSummary for Revio data
#101 opened Jun 16, 2024 by jxmelody
2
Any detailed description of the input files for summarizeModifications softwares
#100 opened Mar 18, 2024 by Jingquan-Li
1
The results are mapped to an opposite strand than their alignment, does the argument --referenceWindow remains the same for both strands?
#99 opened Feb 17, 2024 by Marjan-Hosseini
How critical is the "Non-unique read group integer IDs found" warning in running ipdSummary?
#98 opened Jan 24, 2024 by Marjan-Hosseini
3
ipdSummary command stops working if --identify m5C_TET is included in command, and does not give any m5C info either
#97 opened Jan 24, 2024 by Marjan-Hosseini
1
ipdSummary takes significant time but at a low CPU use
#96 opened Jun 21, 2023 by ck-theory
Release on PyPI?
#93 opened Apr 28, 2022 by palao
1
ipdSummary: AssertionError Child process exited with exitcode=1
#92 opened Apr 28, 2022 by anikajohn
1
Is replaceScipyNormPdf in MixtureEstimationMethods.py correct?
#91 opened Apr 17, 2022 by ZhangBio
Child process exited with exitcode=1. Aborting.
#90 opened Jan 15, 2022 by GaoChengyu
1
Support HDF5 outputs again
#89 opened Dec 30, 2021 by hisakatha
1
the output content does not increase in one place
#88 opened Nov 2, 2021 by chenchen-eng
the data set for model training
#87 opened Jun 5, 2021 by SarahChen0401
3
Stop at the same region of genome
#86 opened Apr 23, 2021 by DustinChen1986
1
Is there any oringinal papers of kineticsTools?
#85 opened Apr 7, 2021 by huiiuaa
[Feature request] Verified versions in GitHub
#84 opened Mar 25, 2021 by GDelevoye
Is there a mistake in script MixtureEstimationMethods.py?
#81 opened Nov 30, 2020 by xyw1
1
ipdSummary: Chemistry cannot be identified---cannot perform kinetic analysis
#80 opened Oct 27, 2020 by wxie-18
2
ipdSummary: UnboundLocalError: local variable 'mods' referenced before assignment
#77 opened Jul 17, 2020 by nick-youngblut
5
ImportError: No module named pyBigWig
#70 opened Dec 11, 2019 by liufeibio
9
Training sets for GBM learning machinery
#69 opened Nov 29, 2019 by Smart-zhi
KeyError: 'FRAMERATEHZ'
#66 opened Mar 12, 2019 by istolarek
1
Determine significant coverage and score value in the ipdSummary gff
#65 opened Dec 14, 2018 by uceleste
1
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