Rename QSIPrep --> QSIPost.

PennLINC · May 13, 2024 · 3dedb4d · 3dedb4d
1 parent 934bb0c
commit 3dedb4d
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Showing 173 changed files with 1,394 additions and 1,394 deletions.
diff --git a/.circleci/3TissueReconTests.sh b/.circleci/3TissueReconTests.sh
@@ -16,8 +16,8 @@ This tests the following features:
 Inputs:
 -------
 
- - qsiprep single shell results (data/DSDTI_fmap)
- - qsiprep multi shell results (data/DSDTI_fmap)
+ - qsipost single shell results (data/DSDTI_fmap)
+ - qsipost multi shell results (data/DSDTI_fmap)
 
 DOC
 set +e
@@ -36,8 +36,8 @@ TESTNAME=mrtrix_singleshell_ss3t_test
 setup_dir ${TESTDIR}/${TESTNAME}
 TEMPDIR=${TESTDIR}/${TESTNAME}/work
 OUTPUT_DIR=${TESTDIR}/${TESTNAME}/derivatives
-BIDS_INPUT_DIR=${TESTDIR}/data/singleshell_output/qsiprep
-QSIPREP_CMD=$(run_qsiprep_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
+BIDS_INPUT_DIR=${TESTDIR}/data/singleshell_output/qsipost
+QSIPREP_CMD=$(run_qsipost_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
 
 ${QSIPREP_CMD} \
 	 -w ${TEMPDIR} \
@@ -53,8 +53,8 @@ TESTNAME=mrtrix_singleshell_ss3t_noACT_test
 setup_dir ${TESTDIR}/${TESTNAME}
 TEMPDIR=${TESTDIR}/${TESTNAME}/work
 OUTPUT_DIR=${TESTDIR}/${TESTNAME}/derivatives
-BIDS_INPUT_DIR=${TESTDIR}/data/singleshell_output/qsiprep
-QSIPREP_CMD=$(run_qsiprep_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
+BIDS_INPUT_DIR=${TESTDIR}/data/singleshell_output/qsipost
+QSIPREP_CMD=$(run_qsipost_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
 
 ${QSIPREP_CMD} \
 	 -w ${TEMPDIR} \

diff --git a/.circleci/AMICOReconTests.sh b/.circleci/AMICOReconTests.sh
@@ -16,8 +16,8 @@ This tests the following features:
 Inputs:
 -------
 
- - qsiprep single shell results (data/DSDTI_fmap)
- - qsiprep multi shell results (data/DSDTI_fmap)
+ - qsipost single shell results (data/DSDTI_fmap)
+ - qsipost multi shell results (data/DSDTI_fmap)
 
 DOC
 set +e
@@ -36,8 +36,8 @@ TESTNAME=amico_noddi_test
 setup_dir ${TESTDIR}/${TESTNAME}
 TEMPDIR=${TESTDIR}/${TESTNAME}/work
 OUTPUT_DIR=${TESTDIR}/${TESTNAME}/derivatives
-BIDS_INPUT_DIR=${TESTDIR}/data/multishell_output/qsiprep
-QSIPREP_CMD=$(run_qsiprep_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
+BIDS_INPUT_DIR=${TESTDIR}/data/multishell_output/qsipost
+QSIPREP_CMD=$(run_qsipost_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
 
 ${QSIPREP_CMD}  \
 	 -w ${TEMPDIR} \

diff --git a/.circleci/AllFieldmaps.sh b/.circleci/AllFieldmaps.sh
@@ -5,7 +5,7 @@ cat << DOC
 AllFieldmaps test
 =================
 
-Instead of running full workflows, this test checks that workflows can 
+Instead of running full workflows, this test checks that workflows can
 be built for all sorts of fieldmap configurations.
 
 This tests the following features:
@@ -35,7 +35,7 @@ setup_dir ${TESTDIR}/${TESTNAME}
 TEMPDIR=${TESTDIR}/${TESTNAME}/work
 OUTPUT_DIR=${TESTDIR}/${TESTNAME}/derivatives
 BIDS_INPUT_DIR=${TESTDIR}/data/fmaptests/DSDTI_fmap
-QSIPREP_CMD=$(run_qsiprep_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
+QSIPREP_CMD=$(run_qsipost_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
 
 ${QSIPREP_CMD} \
 	 -w ${TEMPDIR} \
@@ -49,7 +49,7 @@ setup_dir ${TESTDIR}/${TESTNAME}
 TEMPDIR=${TESTDIR}/${TESTNAME}/work
 OUTPUT_DIR=${TESTDIR}/${TESTNAME}/derivatives
 BIDS_INPUT_DIR=${TESTDIR}/data/fmaptests/DSCSDSI_fmap
-QSIPREP_CMD=$(run_qsiprep_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
+QSIPREP_CMD=$(run_qsipost_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
 
 # Test blip-up blip-down shelled series (TOPUP/eddy)
 ${QSIPREP_CMD} \

diff --git a/.circleci/AutoTrackTest.sh b/.circleci/AutoTrackTest.sh
@@ -12,8 +12,8 @@ This tests the following features:
 Inputs:
 -------
 
- - qsiprep single shell results (data/DSDTI_fmap)
- - qsiprep multi shell results (data/DSDTI_fmap)
+ - qsipost single shell results (data/DSDTI_fmap)
+ - qsipost multi shell results (data/DSDTI_fmap)
 
 DOC
 set +e
@@ -30,8 +30,8 @@ TESTNAME=autotrack
 setup_dir ${TESTDIR}/${TESTNAME}
 TEMPDIR=${TESTDIR}/${TESTNAME}/work
 OUTPUT_DIR=${TESTDIR}/${TESTNAME}/derivatives
-BIDS_INPUT_DIR=${TESTDIR}/data/multishell_output/qsiprep
-QSIPREP_CMD=$(run_qsiprep_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
+BIDS_INPUT_DIR=${TESTDIR}/data/multishell_output/qsipost
+QSIPREP_CMD=$(run_qsipost_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
 
 ${QSIPREP_CMD} \
 	 -w ${TEMPDIR} \

diff --git a/.circleci/CUDATest.sh b/.circleci/CUDATest.sh
@@ -26,7 +26,7 @@ TEMPDIR=${TESTDIR}/${TESTNAME}/work
 OUTPUT_DIR=${TESTDIR}/${TESTNAME}/derivatives
 BIDS_INPUT_DIR=${TESTDIR}/data/tinytensor_rpe_series
 export FS_LICENSE=${TESTDIR}/data/license.txt
-QSIPREP_CMD=$(run_qsiprep_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
+QSIPREP_CMD=$(run_qsipost_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
 
 # Do the anatomical run on its own
 ${QSIPREP_CMD} \

diff --git a/.circleci/DIPYReconTests.sh b/.circleci/DIPYReconTests.sh
@@ -16,8 +16,8 @@ This tests the following features:
 Inputs:
 -------
 
- - qsiprep single shell results (data/DSDTI_fmap)
- - qsiprep multi shell results (data/DSDTI_fmap)
+ - qsipost single shell results (data/DSDTI_fmap)
+ - qsipost multi shell results (data/DSDTI_fmap)
 
 DOC
 set +e
@@ -36,8 +36,8 @@ TESTNAME=dipy_mapmri_test
 setup_dir ${TESTDIR}/${TESTNAME}
 TEMPDIR=${TESTDIR}/${TESTNAME}/work
 OUTPUT_DIR=${TESTDIR}/${TESTNAME}/derivatives
-BIDS_INPUT_DIR=${TESTDIR}/data/multishell_output/qsiprep
-QSIPREP_CMD=$(run_qsiprep_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
+BIDS_INPUT_DIR=${TESTDIR}/data/multishell_output/qsipost
+QSIPREP_CMD=$(run_qsipost_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
 
 ${QSIPREP_CMD} \
 	 -w ${TEMPDIR} \

diff --git a/.circleci/DRBUDDI_SHORELine_epi.sh b/.circleci/DRBUDDI_SHORELine_epi.sh
@@ -25,7 +25,7 @@ TEMPDIR=${TESTDIR}/${TESTNAME}/work
 OUTPUT_DIR=${TESTDIR}/${TESTNAME}/derivatives
 BIDS_INPUT_DIR=${TESTDIR}/data/tinytensor_epi
 export FS_LICENSE=${TESTDIR}/data/license.txt
-QSIPREP_CMD=$(run_qsiprep_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
+QSIPREP_CMD=$(run_qsipost_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
 
 # Do the anatomical run on its own
 ${QSIPREP_CMD} \

diff --git a/.circleci/DRBUDDI_TENSORLine_epi.sh b/.circleci/DRBUDDI_TENSORLine_epi.sh
@@ -24,7 +24,7 @@ TEMPDIR=${TESTDIR}/${TESTNAME}/work
 OUTPUT_DIR=${TESTDIR}/${TESTNAME}/derivatives
 BIDS_INPUT_DIR=${TESTDIR}/data/DSDTI
 export FS_LICENSE=${TESTDIR}/data/license.txt
-QSIPREP_CMD=$(run_qsiprep_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
+QSIPREP_CMD=$(run_qsipost_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
 
 # Do the anatomical run on its own
 ${QSIPREP_CMD} \

diff --git a/.circleci/DRBUDDI_eddy_rpe_series.sh b/.circleci/DRBUDDI_eddy_rpe_series.sh
@@ -26,7 +26,7 @@ TEMPDIR=${TESTDIR}/${TESTNAME}/work
 OUTPUT_DIR=${TESTDIR}/${TESTNAME}/derivatives
 BIDS_INPUT_DIR=${TESTDIR}/data/tinytensor_rpe_series
 export FS_LICENSE=${TESTDIR}/data/license.txt
-QSIPREP_CMD=$(run_qsiprep_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
+QSIPREP_CMD=$(run_qsipost_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
 
 # Do the anatomical run on its own
 ${QSIPREP_CMD} \

diff --git a/.circleci/DSCSDSI.sh b/.circleci/DSCSDSI.sh
@@ -7,7 +7,7 @@ DSCSDSI test
 
 This tests the following features:
  - Whether the --anat-only workflow is successful
- - Whether the regular qsiprep workflow can resume using the
+ - Whether the regular qsipost workflow can resume using the
    working directory from --anat-only
  - The SHORELine motion correction workflow
  - Skipping B1 biascorrection
@@ -34,9 +34,9 @@ TEMPDIR=${TESTDIR}/${TESTNAME}/work
 OUTPUT_DIR=${TESTDIR}/${TESTNAME}/derivatives
 BIDS_INPUT_DIR=${TESTDIR}/data/DSCSDSI_nofmap
 export FS_LICENSE=${TESTDIR}/data/license.txt
-QSIPREP_CMD=$(run_qsiprep_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
+QSIPREP_CMD=$(run_qsipost_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
 
-# name: Run full qsiprep on DSCSDSI
+# name: Run full qsipost on DSCSDSI
 ${QSIPREP_CMD} \
    -w ${TEMPDIR} \
    --sloppy --write-graph --use-syn-sdc \

diff --git a/.circleci/DSCSDSI_outputs.txt b/.circleci/DSCSDSI_outputs.txt
@@ -1,48 +1,48 @@
-qsiprep
-qsiprep/dataset_description.json
-qsiprep/dwiqc.json
-qsiprep/logs
-qsiprep/logs/CITATION.html
-qsiprep/logs/CITATION.md
-qsiprep/logs/CITATION.tex
-qsiprep/sub-tester
-qsiprep/sub-tester/anat
-qsiprep/sub-tester/anat/sub-tester_desc-brain_mask.nii.gz
-qsiprep/sub-tester/anat/sub-tester_desc-preproc_T1w.nii.gz
-qsiprep/sub-tester/anat/sub-tester_dseg.nii.gz
-qsiprep/sub-tester/anat/sub-tester_from-MNI152NLin2009cAsym_to-T1w_mode-image_xfm.h5
-qsiprep/sub-tester/anat/sub-tester_from-orig_to-T1w_mode-image_xfm.txt
-qsiprep/sub-tester/anat/sub-tester_from-T1w_to-MNI152NLin2009cAsym_mode-image_xfm.h5
-qsiprep/sub-tester/anat/sub-tester_label-CSF_probseg.nii.gz
-qsiprep/sub-tester/anat/sub-tester_label-GM_probseg.nii.gz
-qsiprep/sub-tester/anat/sub-tester_label-WM_probseg.nii.gz
-qsiprep/sub-tester/anat/sub-tester_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
-qsiprep/sub-tester/anat/sub-tester_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz
-qsiprep/sub-tester/anat/sub-tester_space-MNI152NLin2009cAsym_dseg.nii.gz
-qsiprep/sub-tester/anat/sub-tester_space-MNI152NLin2009cAsym_label-CSF_probseg.nii.gz
-qsiprep/sub-tester/anat/sub-tester_space-MNI152NLin2009cAsym_label-GM_probseg.nii.gz
-qsiprep/sub-tester/anat/sub-tester_space-MNI152NLin2009cAsym_label-WM_probseg.nii.gz
-qsiprep/sub-tester/dwi
-qsiprep/sub-tester/dwi/sub-tester_acq-HASC55AP_confounds.tsv
-qsiprep/sub-tester/dwi/sub-tester_acq-HASC55AP_desc-ImageQC_dwi.csv
-qsiprep/sub-tester/dwi/sub-tester_acq-HASC55AP_desc-SliceQC_dwi.json
-qsiprep/sub-tester/dwi/sub-tester_acq-HASC55AP_dwiqc.json
-qsiprep/sub-tester/dwi/sub-tester_acq-HASC55AP_space-T1w_desc-3dSHORE_cnr.nii.gz
-qsiprep/sub-tester/dwi/sub-tester_acq-HASC55AP_space-T1w_desc-brain_mask.nii.gz
-qsiprep/sub-tester/dwi/sub-tester_acq-HASC55AP_space-T1w_desc-preproc_dwi.b
-qsiprep/sub-tester/dwi/sub-tester_acq-HASC55AP_space-T1w_desc-preproc_dwi.bval
-qsiprep/sub-tester/dwi/sub-tester_acq-HASC55AP_space-T1w_desc-preproc_dwi.bvec
-qsiprep/sub-tester/dwi/sub-tester_acq-HASC55AP_space-T1w_desc-preproc_dwi.nii.gz
-qsiprep/sub-tester/dwi/sub-tester_acq-HASC55AP_space-T1w_dwiref.nii.gz
-qsiprep/sub-tester/figures
-qsiprep/sub-tester/figures/sub-tester_acq-HASC55AP_carpetplot.svg
-qsiprep/sub-tester/figures/sub-tester_acq-HASC55AP_coreg.svg
-qsiprep/sub-tester/figures/sub-tester_acq-HASC55AP_desc-resampled_b0ref.svg
-qsiprep/sub-tester/figures/sub-tester_acq-HASC55AP_desc-sdc_b0.svg
-qsiprep/sub-tester/figures/sub-tester_acq-HASC55AP_dwi_denoise_acq_HASC55AP_dwi_wf_denoising.svg
-qsiprep/sub-tester/figures/sub-tester_acq-HASC55AP_sampling_scheme.gif
-qsiprep/sub-tester/figures/sub-tester_acq-HASC55AP_shoreline_animation.gif
-qsiprep/sub-tester/figures/sub-tester_seg_brainmask.svg
-qsiprep/sub-tester/figures/sub-tester_t1_2_mni.svg
-qsiprep/sub-tester.html
+qsipost
+qsipost/dataset_description.json
+qsipost/dwiqc.json
+qsipost/logs
+qsipost/logs/CITATION.html
+qsipost/logs/CITATION.md
+qsipost/logs/CITATION.tex
+qsipost/sub-tester
+qsipost/sub-tester/anat
+qsipost/sub-tester/anat/sub-tester_desc-brain_mask.nii.gz
+qsipost/sub-tester/anat/sub-tester_desc-preproc_T1w.nii.gz
+qsipost/sub-tester/anat/sub-tester_dseg.nii.gz
+qsipost/sub-tester/anat/sub-tester_from-MNI152NLin2009cAsym_to-T1w_mode-image_xfm.h5
+qsipost/sub-tester/anat/sub-tester_from-orig_to-T1w_mode-image_xfm.txt
+qsipost/sub-tester/anat/sub-tester_from-T1w_to-MNI152NLin2009cAsym_mode-image_xfm.h5
+qsipost/sub-tester/anat/sub-tester_label-CSF_probseg.nii.gz
+qsipost/sub-tester/anat/sub-tester_label-GM_probseg.nii.gz
+qsipost/sub-tester/anat/sub-tester_label-WM_probseg.nii.gz
+qsipost/sub-tester/anat/sub-tester_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
+qsipost/sub-tester/anat/sub-tester_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz
+qsipost/sub-tester/anat/sub-tester_space-MNI152NLin2009cAsym_dseg.nii.gz
+qsipost/sub-tester/anat/sub-tester_space-MNI152NLin2009cAsym_label-CSF_probseg.nii.gz
+qsipost/sub-tester/anat/sub-tester_space-MNI152NLin2009cAsym_label-GM_probseg.nii.gz
+qsipost/sub-tester/anat/sub-tester_space-MNI152NLin2009cAsym_label-WM_probseg.nii.gz
+qsipost/sub-tester/dwi
+qsipost/sub-tester/dwi/sub-tester_acq-HASC55AP_confounds.tsv
+qsipost/sub-tester/dwi/sub-tester_acq-HASC55AP_desc-ImageQC_dwi.csv
+qsipost/sub-tester/dwi/sub-tester_acq-HASC55AP_desc-SliceQC_dwi.json
+qsipost/sub-tester/dwi/sub-tester_acq-HASC55AP_dwiqc.json
+qsipost/sub-tester/dwi/sub-tester_acq-HASC55AP_space-T1w_desc-3dSHORE_cnr.nii.gz
+qsipost/sub-tester/dwi/sub-tester_acq-HASC55AP_space-T1w_desc-brain_mask.nii.gz
+qsipost/sub-tester/dwi/sub-tester_acq-HASC55AP_space-T1w_desc-preproc_dwi.b
+qsipost/sub-tester/dwi/sub-tester_acq-HASC55AP_space-T1w_desc-preproc_dwi.bval
+qsipost/sub-tester/dwi/sub-tester_acq-HASC55AP_space-T1w_desc-preproc_dwi.bvec
+qsipost/sub-tester/dwi/sub-tester_acq-HASC55AP_space-T1w_desc-preproc_dwi.nii.gz
+qsipost/sub-tester/dwi/sub-tester_acq-HASC55AP_space-T1w_dwiref.nii.gz
+qsipost/sub-tester/figures
+qsipost/sub-tester/figures/sub-tester_acq-HASC55AP_carpetplot.svg
+qsipost/sub-tester/figures/sub-tester_acq-HASC55AP_coreg.svg
+qsipost/sub-tester/figures/sub-tester_acq-HASC55AP_desc-resampled_b0ref.svg
+qsipost/sub-tester/figures/sub-tester_acq-HASC55AP_desc-sdc_b0.svg
+qsipost/sub-tester/figures/sub-tester_acq-HASC55AP_dwi_denoise_acq_HASC55AP_dwi_wf_denoising.svg
+qsipost/sub-tester/figures/sub-tester_acq-HASC55AP_sampling_scheme.gif
+qsipost/sub-tester/figures/sub-tester_acq-HASC55AP_shoreline_animation.gif
+qsipost/sub-tester/figures/sub-tester_seg_brainmask.svg
+qsipost/sub-tester/figures/sub-tester_t1_2_mni.svg
+qsipost/sub-tester.html
 /tmp/DSCSDSI/derivatives
diff --git a/.circleci/DSDTI_TOPUP.sh b/.circleci/DSDTI_TOPUP.sh
@@ -33,7 +33,7 @@ TEMPDIR=${TESTDIR}/${TESTNAME}/work
 OUTPUT_DIR=${TESTDIR}/${TESTNAME}/derivatives
 BIDS_INPUT_DIR=${TESTDIR}/data/DSDTI
 export FS_LICENSE=${TESTDIR}/data/license.txt
-QSIPREP_CMD=$(run_qsiprep_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
+QSIPREP_CMD=$(run_qsipost_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
 
 # Do the anatomical run on its own
 ${QSIPREP_CMD} \

diff --git a/.circleci/DSDTI_nofmap.sh b/.circleci/DSDTI_nofmap.sh
@@ -32,7 +32,7 @@ TEMPDIR=${TESTDIR}/${TESTNAME}/work
 OUTPUT_DIR=${TESTDIR}/${TESTNAME}/derivatives
 BIDS_INPUT_DIR=${TESTDIR}/data/DSDTI
 export FS_LICENSE=${TESTDIR}/data/license.txt
-QSIPREP_CMD=$(run_qsiprep_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
+QSIPREP_CMD=$(run_qsipost_cmd ${BIDS_INPUT_DIR} ${OUTPUT_DIR})
 
 # CRITICAL: delete the fieldmap data
 rm -rf data/DSDTI/sub-PNC/fmap

diff --git a/.circleci/DSDTI_nofmap_outputs.txt b/.circleci/DSDTI_nofmap_outputs.txt
@@ -1,48 +1,48 @@
-qsiprep
-qsiprep/dataset_description.json
-qsiprep/dwiqc.json
-qsiprep/logs
-qsiprep/logs/CITATION.html
-qsiprep/logs/CITATION.md
-qsiprep/logs/CITATION.tex
-qsiprep/sub-PNC
-qsiprep/sub-PNC/anat
-qsiprep/sub-PNC/anat/sub-PNC_desc-brain_mask.nii.gz
-qsiprep/sub-PNC/anat/sub-PNC_desc-preproc_T1w.nii.gz
-qsiprep/sub-PNC/anat/sub-PNC_dseg.nii.gz
-qsiprep/sub-PNC/anat/sub-PNC_from-MNI152NLin2009cAsym_to-T1w_mode-image_xfm.h5
-qsiprep/sub-PNC/anat/sub-PNC_from-orig_to-T1w_mode-image_xfm.txt
-qsiprep/sub-PNC/anat/sub-PNC_from-T1w_to-MNI152NLin2009cAsym_mode-image_xfm.h5
-qsiprep/sub-PNC/anat/sub-PNC_label-CSF_probseg.nii.gz
-qsiprep/sub-PNC/anat/sub-PNC_label-GM_probseg.nii.gz
-qsiprep/sub-PNC/anat/sub-PNC_label-WM_probseg.nii.gz
-qsiprep/sub-PNC/anat/sub-PNC_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
-qsiprep/sub-PNC/anat/sub-PNC_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz
-qsiprep/sub-PNC/anat/sub-PNC_space-MNI152NLin2009cAsym_dseg.nii.gz
-qsiprep/sub-PNC/anat/sub-PNC_space-MNI152NLin2009cAsym_label-CSF_probseg.nii.gz
-qsiprep/sub-PNC/anat/sub-PNC_space-MNI152NLin2009cAsym_label-GM_probseg.nii.gz
-qsiprep/sub-PNC/anat/sub-PNC_space-MNI152NLin2009cAsym_label-WM_probseg.nii.gz
-qsiprep/sub-PNC/dwi
-qsiprep/sub-PNC/dwi/sub-PNC_acq-realistic_confounds.tsv
-qsiprep/sub-PNC/dwi/sub-PNC_acq-realistic_desc-ImageQC_dwi.csv
-qsiprep/sub-PNC/dwi/sub-PNC_acq-realistic_desc-SliceQC_dwi.json
-qsiprep/sub-PNC/dwi/sub-PNC_acq-realistic_dwiqc.json
-qsiprep/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-brain_mask.nii.gz
-qsiprep/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-eddy_cnr.nii.gz
-qsiprep/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_dwi.b
-qsiprep/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_dwi.bval
-qsiprep/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_dwi.bvec
-qsiprep/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_dwi.nii.gz
-qsiprep/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_dwiref.nii.gz
-qsiprep/sub-PNC/figures
-qsiprep/sub-PNC/figures/sub-PNC_acq-realistic_carpetplot.svg
-qsiprep/sub-PNC/figures/sub-PNC_acq-realistic_coreg.svg
-qsiprep/sub-PNC/figures/sub-PNC_acq-realistic_desc-resampled_b0ref.svg
-qsiprep/sub-PNC/figures/sub-PNC_acq-realistic_desc-sdc_b0.svg
-qsiprep/sub-PNC/figures/sub-PNC_acq-realistic_dwi_denoise_acq_realistic_dwi_wf_biascorr.svg
-qsiprep/sub-PNC/figures/sub-PNC_acq-realistic_dwi_denoise_acq_realistic_dwi_wf_denoising.svg
-qsiprep/sub-PNC/figures/sub-PNC_acq-realistic_sampling_scheme.gif
-qsiprep/sub-PNC/figures/sub-PNC_seg_brainmask.svg
-qsiprep/sub-PNC/figures/sub-PNC_t1_2_mni.svg
-qsiprep/sub-PNC.html
+qsipost
+qsipost/dataset_description.json
+qsipost/dwiqc.json
+qsipost/logs
+qsipost/logs/CITATION.html
+qsipost/logs/CITATION.md
+qsipost/logs/CITATION.tex
+qsipost/sub-PNC
+qsipost/sub-PNC/anat
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