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Update documentation for 0.5.0 release (#937)
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tsalo authored Sep 13, 2023
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4 changes: 2 additions & 2 deletions CITATION.cff
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- BIDS-App
- Neuroimaging
license: BSD-3-Clause
version: 0.4.0
date-released: '2023-06-12'
version: 0.5.0
date-released: '2023-09-13'
40 changes: 40 additions & 0 deletions docs/changes.md
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# What's New

## 0.5.0

The 0.5.0 release prepares for the XCP-D manuscript, so I plan to not introduce any backwards-incompatible changes between this release and 1.0.0 (the official paper release).
<!-- Release notes generated using configuration in .github/release.yml at main -->

### 🛠 Breaking Changes
* Add CIFTI subcortical atlas to XCP-D by @tsalo in https://github.com/PennLINC/xcp_d/pull/864
* Change "ciftiSubcortical" atlas name to "HCP" by @tsalo in https://github.com/PennLINC/xcp_d/pull/932
### 🎉 Exciting New Features
* Write out top-level sidecar for PennLINC QC file by @tsalo in https://github.com/PennLINC/xcp_d/pull/894
* Parcellate ReHo, ALFF, and surface morphometric maps by @tsalo in https://github.com/PennLINC/xcp_d/pull/839
* Refactor dcan/hcp ingestion and add more surface files by @tsalo in https://github.com/PennLINC/xcp_d/pull/887
* Add "none" option for denoising by @tsalo in https://github.com/PennLINC/xcp_d/pull/879
* Add `--exact-time` parameter by @tsalo in https://github.com/PennLINC/xcp_d/pull/885
* Allow white matter surface suffix to be either "_smoothwm" or "_white" by @tsalo in https://github.com/PennLINC/xcp_d/pull/899
* Add `--fs-license-file` parameter to command line interface by @tsalo in https://github.com/PennLINC/xcp_d/pull/930
* Generate executive summary figures without `--dcan-qc` by @tsalo in https://github.com/PennLINC/xcp_d/pull/936
### 🐛 Bug Fixes
* Standardize executive summary carpet if params is "none" by @tsalo in https://github.com/PennLINC/xcp_d/pull/916
* Support CIFTI morphometry files and add PNC test data by @tsalo in https://github.com/PennLINC/xcp_d/pull/922
* Correct ABCD/HCP surface ingression by @tsalo in https://github.com/PennLINC/xcp_d/pull/927
### Other Changes
* Add contributing documentation by @tsalo in https://github.com/PennLINC/xcp_d/pull/893
* Update changelog and CFF file for 0.4.0 by @tsalo in https://github.com/PennLINC/xcp_d/pull/896
* Change packaging to use hatch-vcs and pyproject.toml by @tsalo in https://github.com/PennLINC/xcp_d/pull/897
* Fix description of signal denoising method in docs by @tsalo in https://github.com/PennLINC/xcp_d/pull/898
* Improve QC sidecar contents by @tsalo in https://github.com/PennLINC/xcp_d/pull/900
* Rename the parcellated ALFF/ReHo outputs by @tsalo in https://github.com/PennLINC/xcp_d/pull/902
* Remove workaround for nonbinary Nibabies brain masks by @tsalo in https://github.com/PennLINC/xcp_d/pull/905
* Update Landing Page Figure by @kahinimehta in https://github.com/PennLINC/xcp_d/pull/908
* Remove unused functions in filemanip module by @tsalo in https://github.com/PennLINC/xcp_d/pull/911
* Add tests for xcp_d.utils.utils module by @tsalo in https://github.com/PennLINC/xcp_d/pull/910
* Add tests for xcp_d.utils.execsummary module by @tsalo in https://github.com/PennLINC/xcp_d/pull/912
* Expand tests by @tsalo in https://github.com/PennLINC/xcp_d/pull/913
* Test CLI parameter validation by @tsalo in https://github.com/PennLINC/xcp_d/pull/918
* Refactor collection functions by @tsalo in https://github.com/PennLINC/xcp_d/pull/917


**Full Changelog**: https://github.com/PennLINC/xcp_d/compare/04.0...0.5.0

## 0.4.0

### 🛠 Breaking Changes
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