Merge branch 'dev' into Add_dice_ce_metric

Project-MONAI · Jul 12, 2023 · 1a4b133 · 1a4b133
2 parents 966c99a + 48a86b2
commit 1a4b133
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Showing 4 changed files with 7 additions and 3 deletions.
diff --git a/docs/source/data.rst b/docs/source/data.rst
@@ -152,6 +152,10 @@ PILReader
 .. autoclass:: PILReader
   :members:
 
+NrrdReader
+~~~~~~~~~~
+.. autoclass:: NrrdReader
+  :members:
 
 Image writer
 ------------

diff --git a/monai/apps/auto3dseg/bundle_gen.py b/monai/apps/auto3dseg/bundle_gen.py
@@ -95,7 +95,7 @@ def __init__(self, template_path: PathLike):
             "n_devices": int(torch.cuda.device_count()),
             "NUM_NODES": int(os.environ.get("NUM_NODES", 1)),
             "MN_START_METHOD": os.environ.get("MN_START_METHOD", "bcprun"),
-            "CMD_PREFIX": os.environ.get("CMD_PREFIX", ""),  # type: ignore
+            "CMD_PREFIX": os.environ.get("CMD_PREFIX", ""),
         }
 
     def pre_check_skip_algo(self, skip_bundlegen: bool = False, skip_info: str = "") -> tuple[bool, str]:

diff --git a/monai/apps/auto3dseg/ensemble_builder.py b/monai/apps/auto3dseg/ensemble_builder.py
@@ -453,7 +453,7 @@ def __init__(
             "n_devices": torch.cuda.device_count(),
             "NUM_NODES": int(os.environ.get("NUM_NODES", 1)),
             "MN_START_METHOD": os.environ.get("MN_START_METHOD", "bcprun"),
-            "CMD_PREFIX": os.environ.get("CMD_PREFIX", ""),  # type: ignore
+            "CMD_PREFIX": os.environ.get("CMD_PREFIX", ""),
         }
 
     def set_ensemble_method(self, ensemble_method_name: str = "AlgoEnsembleBestByFold", **kwargs: Any) -> None:

diff --git a/monai/metrics/utils.py b/monai/metrics/utils.py
@@ -190,7 +190,7 @@ def get_mask_edges(
     spatial_dims = len(spacing)
     conv = torch.nn.functional.conv3d if spatial_dims == 3 else torch.nn.functional.conv2d
     vol = torch.stack([seg_pred[None], seg_gt[None]], dim=0).float()  # type: ignore
-    code_pred, code_gt = conv(vol, k.to(vol))  # type: ignore
+    code_pred, code_gt = conv(vol, k.to(vol))
     # edges
     all_ones = len(code_to_area_table) - 1
     edges_pred = (code_pred != 0) & (code_pred != all_ones)