init

.github/workflows/build-image.yaml

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+name: Build image
+
+on:
+  workflow_call:
+    inputs:
+      dockerfile:
+        description: 'Docker file'
+        type: string
+        required: true
+      flavor_dir:
+        description: 'Flavor directory'
+        type: string
+        required: true
+      image_name:
+        description: 'Docker image name'
+        type: string
+        required: true
+      image_repo:
+        description: 'Docker image repo'
+        type: string
+        required: true
+      image_version:
+        description: 'Docker image version'
+        type: string
+        required: true
+      naavre_version:
+        description: 'NaaVRE base image version'
+        type: string
+        required: false
+
+jobs:
+  build:
+    name: Build ${{ inputs.image_name }}
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - id: find-dockerfile
+        name: Find Dockerfile
+        run: |
+          # Choose the {inputs.flavor_dir}/{inputs.dockerfile} if it exists,
+          # otherwise fall-back to docker/{inputs.dockerfile}
+          dockerfile="${{ inputs.flavor_dir }}/${{ inputs.dockerfile }}"
+          [ -f "$dockerfile" ] || dockerfile="./docker/${{ inputs.dockerfile }}"
+          echo "dockerfile=$dockerfile" | tee -a $GITHUB_OUTPUT
+
+      - name: Build docker
+        uses: docker/build-push-action@v5
+        with:
+          context: .
+          file: ${{ steps.find-dockerfile.outputs.dockerfile }}
+          build-args: |
+            CONDA_ENV_FILE=${{ inputs.flavor_dir }}/environment.yaml
+            NAAVRE_VERSION=${{ inputs.naavre_version }}
+          tags: ${{ inputs.image_repo }}/${{ inputs.image_name }}:${{ inputs.image_version }},${{ inputs.image_repo }}/${{ inputs.image_name }}:latest
+          cache-from: type=gha
+          cache-to: type=gha,mode=min
+          outputs: type=docker,dest=/tmp/${{ inputs.image_name }}.tar
+
+      - name: Upload artifact
+        uses: actions/upload-artifact@v4
+        with:
+          name: ${{ inputs.image_name }}
+          path: /tmp/${{ inputs.image_name }}.tar
+          retention-days: 1

.github/workflows/make-flavor.yaml

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+name: Make flavor
+
+on:
+  workflow_call:
+    inputs:
+      flavor_name:
+        description: 'NaaVRE flavor name'
+        type: string
+        required: true
+      image_repo:
+        description: 'Docker image repo'
+        type: string
+        required: true
+      image_version:
+        description: 'Docker image version'
+        type: string
+        required: true
+      naavre_version:
+        description: 'NaaVRE base image version'
+        type: string
+        required: true
+
+jobs:
+  build-naavre-cell:
+    uses: ./.github/workflows/build-image.yaml
+    with:
+      dockerfile: naavre-cell.Dockerfile
+      flavor_dir: './flavors/${{ inputs.flavor_name }}'
+      image_name: naavre-cell-${{ inputs.flavor_name }}
+      image_repo: ${{ inputs.image_repo }}
+      image_version: ${{ inputs.image_version }}
+
+  build-naavre-jupyter:
+    uses: ./.github/workflows/build-image.yaml
+    with:
+      dockerfile: naavre-jupyter.Dockerfile
+      flavor_dir: './flavors/${{ inputs.flavor_name }}'
+      image_name: naavre-jupyter-${{ inputs.flavor_name }}
+      image_repo: ${{ inputs.image_repo }}
+      image_version: ${{ inputs.naavre_version }}-${{ inputs.image_version }}
+      naavre_version: ${{ inputs.naavre_version }}
+
+  test:
+    uses: ./.github/workflows/test-naavre-cell.yaml
+    needs: [build-naavre-cell]
+    with:
+      image_name: naavre-cell-${{ inputs.flavor_name }}
+      image_repo: ${{ inputs.image_repo }}
+      tests_dir: './flavors/${{ inputs.flavor_name }}/tests/'
+
+  push-naavre-cell:
+    uses: ./.github/workflows/push-image.yaml
+    needs: [build-naavre-cell, test]
+    with:
+      image_name: naavre-cell-${{ inputs.flavor_name }}
+      image_repo: ${{ inputs.image_repo }}
+    if: ${{ github.event_name == 'release' }}
+
+  push-naavre-jupyter:
+    uses: ./.github/workflows/push-image.yaml
+    needs: [build-naavre-jupyter, test]
+    with:
+      image_name: naavre-jupyter-${{ inputs.flavor_name }}
+      image_repo: ${{ inputs.image_repo }}
+    if: ${{ github.event_name == 'release' }}

.github/workflows/make.yaml

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+name: Make
+
+on:
+  release:
+    types: [published]
+  push:
+    branches:
+      - '**'
+    tags-ignore:
+      - '**'
+  schedule:
+    - cron: '0 4 5,25 * *'
+
+jobs:
+  list-flavors:
+    name: List flavors
+    runs-on: ubuntu-latest
+    outputs:
+      flavors: ${{ steps.list-flavors.outputs.flavors }}
+    steps:
+      - uses: actions/checkout@v4
+      - id: list-flavors
+        name: List flavors
+        run: |
+          flavors=$(find ./flavors -mindepth 1 -maxdepth 1 -type d | jq -Rsc 'split("\n")[:-1] | map(split("/")[-1])')
+          echo "flavors=$flavors" | tee -a $GITHUB_OUTPUT
+
+  flavors:
+    name: Flavor ${{ matrix.flavor_name }}
+    uses: ./.github/workflows/make-flavor.yaml
+    needs: [list-flavors]
+    with:
+      flavor_name: ${{ matrix.flavor_name }}
+      image_repo: 'ghcr.io/qcdis/n-a-a-vre'
+      image_version: ${{ github.ref_type == 'tag' && github.ref_name || github.sha }}
+      naavre_version: 'v2.3.3-beta'
+    strategy:
+      matrix:
+        flavor_name: ${{ fromJson(needs.list-flavors.outputs.flavors) }}

.github/workflows/push-image.yaml

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+name: Push image
+
+on:
+  workflow_call:
+    inputs:
+      image_name:
+        description: 'Docker image name'
+        type: string
+        required: true
+      image_repo:
+        description: 'Docker image repo'
+        type: string
+        required: true
+
+jobs:
+  push:
+    name: Push ${{ inputs.image_name }}
+    runs-on: ubuntu-latest
+    steps:
+      - name: Download artifact
+        uses: actions/download-artifact@v4
+        with:
+          name: ${{ inputs.image_name }}
+          path: /tmp
+
+      - name: Load image
+        run: |
+          docker load --input /tmp/${{ inputs.image_name }}.tar
+          docker image ls -a
+
+      - name: Login to container registry
+        uses: docker/login-action@v3
+        env:
+          REGISTRY_NAME: ${{ vars.REGISTRY_NAME || 'ghcr.io' }}
+          REGISTRY_USERNAME: ${{ secrets.REGISTRY_USERNAME || github.actor }}
+          REGISTRY_PASSWORD: ${{ secrets.REGISTRY_PASSWORD || secrets.GITHUB_TOKEN }}
+        with:
+          registry: ${{ env.REGISTRY_NAME }}
+          username: ${{ env.REGISTRY_USERNAME }}
+          password: ${{ env.REGISTRY_PASSWORD }}
+
+      - name: Push image
+        run: |
+          docker push ${{ inputs.image_repo }}/${{ inputs.image_name }} --all-tags

.github/workflows/test-naavre-cell.yaml

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+name: Test cell base image
+
+on:
+  workflow_call:
+    inputs:
+      image_name:
+        description: 'Docker image name'
+        type: string
+        required: true
+      image_repo:
+        description: 'Docker image repo'
+        type: string
+        required: true
+      tests_dir:
+        description: 'Directory containing test files'
+        type: string
+        required: true
+
+jobs:
+  test:
+    name: Test ${{ inputs.image_name }}
+    runs-on: ubuntu-latest
+    steps:
+      - name: Download artifact
+        uses: actions/download-artifact@v4
+        with:
+          name: ${{ inputs.image_name }}
+          path: /tmp
+
+      - name: Load image
+        run: |
+          docker load --input /tmp/${{ inputs.image_name }}.tar
+          docker image ls -a
+
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Run tests
+        run: |
+          docker run -v ${{ inputs.tests_dir }}:/tests/ ${{ inputs.image_repo }}/${{ inputs.image_name }} /bin/sh /tests/tests.sh

.gitignore

@@ -0,0 +1,3 @@
+.idea/
+
+.env