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add subtitles from youtube edited by Steve
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fedorov committed Feb 3, 2017
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185 changes: 185 additions & 0 deletions tutorials/intro-cc/dcmqi-part1-updated.sbv
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in this video we will go over the steps

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you will need to complete to set up the

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environment on your computer to use the

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same dcmqi as a first step you will need to

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install docker on your system once you

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have completed that step you can issue

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the docker pool command to retrieve the

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dcmqi image from the docker hub this

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will take some time but eventually this

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process will complete and the library

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will be available for use on your

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computer to verify that installation

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completed successfully

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you can issue docker image ls command to

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confirm that the image has been

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installed after that you can run the

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entry point of the container by issuing

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the run command and pass in the name of

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the converter he would like to use to

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the run command as we discussing the

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tutorial later

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next we will need to install the 3D

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slicer application which is the free

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open-source platform for image

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visualization and processing please use

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the nightly build version and download the

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package on your computer once download

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is completed you will need to unpack

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this package and drag the application to

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your application folder if you're using

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Mac once 3D Slicer is installed we will

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also need to install certain extensions

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that are designed to help you visualize

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the data generated by dcmqi

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to do that he will need to open extension

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manager and search for quantitative

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reporting extension the dependences of

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quantitative reporting will be installed

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automatically and include dcmqi extension

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you can also install TCIA browser which

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is an extension that provides the

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interface to the cancer imaging archive

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of the National Cancer Institute it can

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be handy to retrieve sample data sets

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that we will use in the tutorial

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finally the last tool that you can

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install he is the atom editor atom is a

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modern editor which is extensible via

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plugins and we provide a plug-in that

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allows you to look into the content of

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dicom data this plugin can be helpful to

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explore the objects that you create as

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part of the conversion while using dcmqi

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search for the dicom dump package in

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the install packages menu of the item

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browser item editor install the package

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and once you've done that go to the

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settings and make sure that path to the

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dcmtk installation that is listed in the

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settings option of the editor is

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populated with the path as shown on the

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screen
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