Skip to content

Commit

Permalink
Fix trailing whitespace
Browse files Browse the repository at this point in the history
  • Loading branch information
jhiemstrawisc committed Sep 3, 2024
1 parent 2655d1b commit ac805d6
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion docker-wrappers/SPRAS/README.md
Original file line number Diff line number Diff line change
Expand Up @@ -66,7 +66,7 @@ in this environment, first login to an HTCondor Access Point (AP). Then, from th
git clone https://github.com/Reed-CompBio/spras.git
```

**Note:** To work with SPRAS in HTCondor, it is recommended that you build an Apptainer image instead of using Docker. See [Converting Docker Images to Apptainer/Singularity Images](#converting-docker-images-to-apptainersingularity-images) for instructions. Importantly, the Apptainer image must be built for the linux/amd64 architecture. Most HTCondor APs will have `apptainer` installed, but they may not have `docker`. If this is the case, you can build the image with Docker on your local machine, push the image to Docker Hub, and then convert it to Apptainer's `sif` format on the AP.
**Note:** To work with SPRAS in HTCondor, it is recommended that you build an Apptainer image instead of using Docker. See [Converting Docker Images to Apptainer/Singularity Images](#converting-docker-images-to-apptainersingularity-images) for instructions. Importantly, the Apptainer image must be built for the linux/amd64 architecture. Most HTCondor APs will have `apptainer` installed, but they may not have `docker`. If this is the case, you can build the image with Docker on your local machine, push the image to Docker Hub, and then convert it to Apptainer's `sif` format on the AP.

There are currently two options for running SPRAS with HTCondor. The first is to submit all SPRAS jobs to a single remote Execution Point (EP). The second
is to use the Snakemake HTCondor executor to parallelize the workflow by submitting each job to its own EP.
Expand Down

0 comments on commit ac805d6

Please sign in to comment.