Add codespell: config, pre-commit, workflow + 1 typo fixed #211
Workflow file for this run
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name: CI | |
on: | |
pull_request: | |
branches: [ master ] | |
jobs: | |
run-tests: | |
runs-on: ubuntu-22.04 | |
strategy: | |
matrix: | |
python-version: ['3.11', '3.10', '3.9', '3.8'] | |
steps: | |
- name: Install Apptainer | |
env: | |
VERSION: 1.1.5 | |
run: | | |
sudo apt-get update | |
sudo apt-get install -y wget | |
wget https://github.com/apptainer/apptainer/releases/download/v${VERSION}/apptainer_${VERSION}_amd64.deb | |
wget https://github.com/apptainer/apptainer/releases/download/v${VERSION}/apptainer-suid_${VERSION}_amd64.deb | |
sudo apt-get install --yes ./apptainer* | |
- name: Set Apptainer/Singularity environment variables | |
run: | | |
# Give reproenv the full path to apptainer, so it still works with `sudo`. | |
echo REPROENV_APPTAINER_PROGRAM=apptainer >> $GITHUB_ENV | |
echo APPTAINER_CACHEDIR=/dev/shm/$(whoami)/singularity >> $GITHUB_ENV | |
- uses: actions/checkout@v2 | |
- name: Set up Python | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install neurodocker | |
run: python -m pip install --editable .[dev] | |
- name: Check types | |
run: mypy --install-types --non-interactive neurodocker | |
- name: Check style | |
run: flake8 neurodocker | |
- name: Check black formatting | |
run: black --check neurodocker | |
- name: Run python tests | |
run: pytest --numprocesses auto | |
- name: Get code coverage | |
run: codecov |